Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_F02
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   137   3e-33
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    30   0.71 
AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical ...    27   5.0  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical...    27   8.8  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    27   8.8  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   8.8  
AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen prot...    27   8.8  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  137 bits (332), Expect = 3e-33
 Identities = 73/136 (53%), Positives = 86/136 (63%), Gaps = 3/136 (2%)
 Frame = +3

Query: 60  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 239
           M +PK +   IYEYLF EGV VAKKD++A  H  +E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 240 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRS 419
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R   V       P A      DR 
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDRE 119

Query: 420 AYRR---TPAAPGVAP 458
           AYR    T A PG AP
Sbjct: 120 AYRTEKVTEAGPGGAP 135


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +3

Query: 369 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 458
           G V RP APAR A   +  R  PAAP   P
Sbjct: 33  GRVSRPAAPARGAPPAARGRPAPAAPANVP 62


>AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.8 protein.
          Length = 789

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 357 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 443
           T+   PVGR ++ ARS ++ SA R+ P +
Sbjct: 8   TIENTPVGRGNSGARSHKEPSAKRKKPTS 36


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 144 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 275
           AP   ++  +PNL   + ++S    GY+      + FYWY+ +E
Sbjct: 16  APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57


>Z82083-9|CAB04975.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 312 PEIVPATLKR-SVRTETVRRGPVGRPDAPARSAEDRSAYR 428
           P ++P T    SV+T+   +GPV     P      R AYR
Sbjct: 17  PSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNGRRAYR 56


>Z81503-6|CAB04115.1|  635|Caenorhabditis elegans Hypothetical
           protein ZK1010.9 protein.
          Length = 635

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 312 PEIVPATLKR-SVRTETVRRGPVGRPDAPARSAEDRSAYR 428
           P ++P T    SV+T+   +GPV     P      R AYR
Sbjct: 17  PSVIPPTAPTASVKTKAPTKGPVQPQKKPTTVDNGRRAYR 56


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 454 ATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRT 344
           +T GAA  R      SA RA  S  P GP R  + R+
Sbjct: 305 STTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRS 341


>AL117206-10|CAB60452.2|  258|Caenorhabditis elegans Hypothetical
           protein Y67A10A.2 protein.
          Length = 258

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 434 STSVCRSVLSRAGWGIRTTNRATAYCLCTY 345
           STS C S  S+  + IRT     + CL T+
Sbjct: 153 STSTCSSSTSKTPFSIRTPLNQASQCLSTF 182


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
            protein Y39A1B.3 protein.
          Length = 1499

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 324  PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAP 446
            P T+  S RT +       R   PA+S ED S     PAAP
Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAP 1472


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
            compensation protein protein.
          Length = 1455

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 324  PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAP 446
            P T+  S RT +       R   PA+S ED S     PAAP
Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAP 1428


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 174 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 344
           P +QV+  +  +    ++ E      F W+ T+  I  + +F+  PP  +I+   LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311


>AC024775-6|AAK68452.2|  304|Caenorhabditis elegans Collagen protein
           108 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 369 GPVGRPDAPARSAEDRSAYRRTPAAPGVA 455
           G  G P +P +  ED  +   TP APG A
Sbjct: 198 GNPGAPGSPGKPGEDGKSEPITPGAPGPA 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,223,186
Number of Sequences: 27780
Number of extensions: 205840
Number of successful extensions: 715
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)