Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_E20
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    25   0.38 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.66 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.7  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   4.6  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   6.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.1  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 324 RMSGNNAKEPPLQTMTGLPPNHNPWMYGVFHHPYNNYHGGMY 449
           R     ++EP +  ++ L  N+N   Y  +++ YNNY+  +Y
Sbjct: 70  RTERERSREPKI--ISSLSNNYNYSNYNNYNNNYNNYNKKLY 109


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 384 NHNPWMYGVFHHPYNNYHGGMYAPYXNQYF 473
           N+N +    +++ YNNY+   Y  Y   Y+
Sbjct: 325 NNNNYNNNNYNNNYNNYNNNNYNNYKKLYY 354


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 468 IDYXKVHTFHHGNCYMDDEKHHTS 397
           ++  ++   HH NC ++ + HHT+
Sbjct: 392 MEVMELSDLHHPNCKINRKVHHTT 415


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 100 SIYCYLLQYPRILF 141
           SIY  LL+YPR +F
Sbjct: 380 SIYSSLLRYPRSIF 393


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 403 MVFFIIHITITMVEC 447
           ++ FI+ +TIT+V C
Sbjct: 7   LILFILSLTITIVMC 21


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 305 TNYCKVFLQAITFL*EVLIPLIDSCVKILVTATISYKNK 189
           T   KV LQA     E+   L+ +CV++    TI  + +
Sbjct: 8   TKKIKVGLQAHVIPAELTAKLLGNCVRVSPVITIEPRRR 46


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 98  PPFIVIYYNIQEYYL 142
           P F ++Y NI  Y+L
Sbjct: 418 PAFYMLYQNILSYFL 432


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 234 LCENLSYGHYFLQKQNGDDKESRL 163
           +C+ L    Y  ++   DDKE  L
Sbjct: 679 ICQLLKDSQYIREQTESDDKEGYL 702


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,459
Number of Sequences: 438
Number of extensions: 3689
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)