Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_E19
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 30 0.16
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 29 0.37
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar... 28 0.49
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 28 0.64
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 1.1
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 26 2.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 2.0
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 2.6
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.6
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 3.4
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 25 3.4
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 3.4
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 25 4.5
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 4.5
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 4.5
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 24 7.9
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 24 7.9
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.9 bits (64), Expect = 0.16
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 131 DDEGCAEPSEDEYDALNDETFGHGSDEYDWEVEHEHLAGQLESSR--RQNSGID 286
+DE E +E+E DA +E DE D E E E G+ + +R R+N +D
Sbjct: 95 EDEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGGRRKRARHDRRNQFLD 148
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 28.7 bits (61), Expect = 0.37
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 83 MADSFFGFDTSLSNLNDDEGCAEPSEDEYDALNDETFGHGSDEYDWEVEHEHLAG----Q 250
+ S+F D+ +S +++E SED+ D E G D EVE+ AG +
Sbjct: 1306 LKSSYFDSDSDISMSDNEEDVEMRSEDQSDTSESEV-GSKDDVQSEEVENLESAGDEDEE 1364
Query: 251 LESSRRQNSGID 286
E S Q +G D
Sbjct: 1365 EEPSALQANGFD 1376
>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 0.49
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 237 TSPDSSRAVDARTAASTRLPTHSSSC 314
TSP SS +VD + T+ P +S+SC
Sbjct: 43 TSPSSSTSVDKKKPLFTKSPRNSASC 68
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 27.9 bits (59), Expect = 0.64
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 116 LSNLNDDEGCAEPSEDEYDALNDETFGHGSDEYDWEVEHEHLAGQLESSRRQNSGIDEI 292
L N +D E E+E D + + G+ +D++ + EH H Q E N D I
Sbjct: 494 LPNTTNDINIFEEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQ-EHHHEHNHNHDHI 551
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 1.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 116 LSNLNDDEGCAEPSEDEYDALNDETFGHGSDEYDWEVEHEHLAGQLESSRRQNSGIDE 289
+SN ++ EG S ++ ++L F GSD+YD+ L G +S I E
Sbjct: 292 ISNYDETEGKVNFSLEDSESLE---FDEGSDDYDYAKLTTELVGNTDSLAEDEDDILE 346
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.2 bits (55), Expect = 2.0
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 287 RRCRCSGVDCSRA-VRRGAHVPPPSHIRRIHGRMSHRSMHRIRPLRVLRNLRRHLSS 120
++C+ GV V+R + SH+ G +S + I L LR LR+HLSS
Sbjct: 324 KKCKIDGVIVGNTTVQRPKTLKSTSHVEETGG-LSGPPLKPIA-LNTLRTLRKHLSS 378
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 2.0
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 158 EDEYDALNDETFGHGSDEYDWEVEHEHLAGQLESSRRQNSGIDEIAN 298
E+E D L + D + L Q+ES R QN IDE N
Sbjct: 434 EEERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKN 480
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 107 DTSLSNLNDDEGCAEPSEDEYDALNDETFGHGSDEYDWEVEHE 235
D SL + + P+ED ++ND++ SDE + E +HE
Sbjct: 292 DKSLRSSTREVSVESPNED---SVNDDSSSDVSDEKETEAKHE 331
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 2.6
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +3
Query: 51 HLCTTIYEKIQWQIHSLGSILHYRT*MTTKVAQNPQRTNTMH*TMRHSAMDPTNMTGR-- 224
++ ++IY Q Q S L ++ M+ K +P + +H +HS DP MT R
Sbjct: 446 YMQSSIYGVNQEQKSEYPSNLSMQSSMSIK---DPSQLQRIHLYPQHSQYDPNGMTMRDH 502
Query: 225 WNMSTSPDSSRAVDARTAASTR-LPTHS 305
++ P++ + + T S+R L H+
Sbjct: 503 YSERIEPEAKPSDETLTVRSSRDLSVHN 530
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 3.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 116 LSNLNDDEGCAEPSEDEYDALNDETFGHGSDEY 214
L+N +GC P+EDE + D + Y
Sbjct: 639 LNNYASSQGCRLPTEDELNCFYDRVLERTDEPY 671
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +2
Query: 41 QVMTFMYN----DL*KNPMADSFFGFDTSLSNLNDDEGCAEPSEDEYDAL 178
Q+ F+ N D +NP +S + N++D E E+EY+ L
Sbjct: 76 QISAFISNGHQKDTLENPAIESSYEESEHARNVSDSESITSQEEEEYEEL 125
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.4 bits (53), Expect = 3.4
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 21/81 (25%)
Frame = +2
Query: 92 SFFGFDTSL--SNLNDDEGCAEPS----EDEY-----------DALNDETFG--HGS--D 208
SFFGF+T+L N+ +EG E E+ Y D LNDETFG GS
Sbjct: 2 SFFGFNTTLPKENMFPNEGQLEEDGIDFEETYDDLGNQLNEAGDELNDETFGVSAGSIGR 61
Query: 209 EYDWEVEHEHLAGQLESSRRQ 271
++D+ + QLE + Q
Sbjct: 62 DFDFSGTTAQASAQLEDEQYQ 82
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 158 EDEYDALNDETFGHGSDEYDWEVEHEHLAGQL 253
E+EY +LND T G+ S + + EV E +A ++
Sbjct: 460 EEEYRSLNDITEGNASPDQN-EVAEESVAEEV 490
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.0 bits (52), Expect = 4.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 291 LPTHSSSCHCRS*FWTIRTRRSPGRSAPAFGQPMRPFP 404
+P+HS S WTIR P A + Q M+ FP
Sbjct: 91 IPSHSQE----SSHWTIRHESMPSALAGSSAQSMQQFP 124
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.0 bits (52), Expect = 4.5
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 7 WRRPPLRHMCVTSHDIYVQ 63
W +P H+C+TS+ + +Q
Sbjct: 541 WYKPDTWHVCITSYQLVLQ 559
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 24.2 bits (50), Expect = 7.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 104 FDTSLSNLNDDEGCAEPSEDEY 169
F T +S +ND C++P +EY
Sbjct: 219 FRTEISIMNDFGQCSQPISEEY 240
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 24.2 bits (50), Expect = 7.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 107 DTSLSNLNDDEGCAEPSEDEYDALNDETFGHGSDEYDWEVEHE 235
D+S + DD +E SE+E + LN E + S+ + E+E E
Sbjct: 22 DSSKKFVKDD---SENSEEELEDLNSEDEFYQSNSSEDEIEEE 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,050
Number of Sequences: 5004
Number of extensions: 31150
Number of successful extensions: 118
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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