Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_E18
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   7.2  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    25   9.5  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.5  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.5  

>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 365 LANMMGEDPELFTQKDVERAI-EYLFPSGIYDPAARPSM 478
           L  MM E+    T  +    + + LFP G Y P +RP++
Sbjct: 224 LQRMMNEENPFATLPNGPTKVWDLLFPKGPYPPISRPAL 262


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 491 DVFPARKAAEFDEAGRPHHCLFYTGKPNFFKLLHDAADHLQQLYKYE-DQV 640
           D++P +   E+ E     + L  +G  N   +L +  + LQQL K + DQV
Sbjct: 84  DIYPMQGGREYLETLVEKYNLHMSGIENLENVLLEQKEQLQQLEKRQTDQV 134


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +2

Query: 296 ERAKEHDEFMKRQQFEYNIGKRHLANMMGED-----PELFTQKDVERAIEYLFPS 445
           +  K +DE++  Q ++    K ++AN++  +     P  F +K  + ++ Y  P+
Sbjct: 13  QELKSNDEYISMQPYKGEDNKSYIANLVRHNALTFCPYYFIEKSGKGSVVYFHPT 67


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 299 SLNKLSWPYLSFSFCSVSPNLLDHLEH 219
           S N + +PY+ F   +V  N+   LEH
Sbjct: 12  SENIIEFPYVDFEELNVHSNIFSELEH 38


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -3

Query: 409 LLSKQFRIFAHHIRKMSFSDVIFKLLSFHKLVMFFCSL*ISFHGLTYLFLFV 254
           L    + I +HHIR      +    + F       C L ISF  L Y+ LF+
Sbjct: 702 LFITSYIIPSHHIRSCKHYFLDRLAILFLTFSPTMCMLSISFEALFYVVLFI 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,206
Number of Sequences: 5004
Number of extensions: 52325
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)