Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_E17
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   3.1  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.0  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   5.3  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    25   7.1  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   9.3  

>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 248 HKILYRET--MWSEIMHENLEQGSLHA 322
           H I++RET  +WSE+M     Q S++A
Sbjct: 78  HVIVWRETGGVWSELMDHTAHQASVNA 104


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 218 LNAERPIHIRDNIINSENVYVYFNRI 141
           +N  R +H+  N++  EN YV+ N I
Sbjct: 557 INPVRVLHVLINLLRDENSYVHLNVI 582


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +2

Query: 14  QNFHQLGSVRHQPVT*ISNDNTNQDDNKLISNNSSCIKEK 133
           Q    +G+VR  P    SND  N+ ++ +++++ + +KE+
Sbjct: 450 QGVDGVGTVRRPPSLVSSNDELNKKNDIVVAHHDNEVKER 489


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = -1

Query: 606 FLXPNLEVRCXENSNCTTSSQHQR----TRDVSICCFYTFFHILWPKVRFLKSTWFY 448
           FL P L  R   N+N     Q +     T   +I  FY  +HI  P V FL    +Y
Sbjct: 32  FLTPKLTKRVYSNTNEVNGLQGRTFGIWTLLSAIVRFYCAYHITNPDVYFLCQCTYY 88


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 214 FNVTQSLKSPVPQNFVPRNYVVRNYAREP 300
           F +  S   P  ++F P+NY+VRN +  P
Sbjct: 219 FFLGHSFVPPNFESFHPKNYLVRNSSSHP 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,127
Number of Sequences: 5004
Number of extensions: 52885
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)