Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_E13
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 110 2e-25
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 109 3e-25
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 0.46
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 5.7
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 5.7
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 7.5
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 7.5
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 9.9
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 110 bits (264), Expect = 2e-25
Identities = 55/112 (49%), Positives = 65/112 (58%)
Frame = +2
Query: 92 VNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 271
V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP M +C+LGD
Sbjct: 13 VETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHD 72
Query: 272 CDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 427
D AK V M SE LIKQIPR +G
Sbjct: 73 LDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124
Score = 66.9 bits (156), Expect = 2e-12
Identities = 31/49 (63%), Positives = 37/49 (75%)
Frame = +3
Query: 408 RFPVLLGPGLNKAGKFPGLLSHXESMTXKIDEVKGTIKFQMXKVLCLSV 554
+ P LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+ KVLCL V
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGV 166
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 109 bits (262), Expect = 3e-25
Identities = 55/112 (49%), Positives = 65/112 (58%)
Frame = +2
Query: 92 VNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 271
V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP M +C+LGD
Sbjct: 13 VEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHD 72
Query: 272 CDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 427
D AK V M SE LIKQIPR +G
Sbjct: 73 LDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/49 (63%), Positives = 37/49 (75%)
Frame = +3
Query: 408 RFPVLLGPGLNKAGKFPGLLSHXESMTXKIDEVKGTIKFQMXKVLCLSV 554
+ P LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+ KVLCL V
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGV 166
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 29.1 bits (62), Expect = 0.46
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 80 STXCVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 205
S+ C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 936 SSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 367 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 266
+G+F+ +LF LIQ + + W + + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +2
Query: 92 VNAVLQSSKDKKRNFLETV 148
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 202 GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 101
G L LW IV+ T L + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 7.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 281 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEAL 147
P H A LQE A AA+ L+ ++NA G +S D +AL
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL 360
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 377 HQIFWPVS*QAFCSYSIFSKPQHPYMAHSRF 285
HQ+F+P + + SY + PQ Y + S +
Sbjct: 415 HQVFYPPTSTSVSSYGLGKTPQPAYGSSSPY 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,056
Number of Sequences: 5004
Number of extensions: 38716
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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