Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_E10
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    28   0.68 
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   2.7  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   8.4  
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ...    25   8.4  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 181 RVRRHTSHYERAIRVYITPTTKTIRASCCRNSQPLEILY 297
           ++R+  S Y +  RVY+TP +   RA   RN     ++Y
Sbjct: 137 KLRQILSQYGKIGRVYLTPESSAKRAQRLRNGGNKRVMY 175


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 156 RKVNEPRVQSTTPHVALRESD*GLYNSNDENDSS 257
           R VN+PR   + PH+A  + D  +  S+++N+++
Sbjct: 661 RSVNDPRRVLSLPHMASADEDHRIPASDNQNNNN 694


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 5   VGKPPGRAPHDRNLRERRAVPTNINFSEIKHASAY 109
           VG+  G+ PHD+++R    +     F  ++H S Y
Sbjct: 294 VGRAHGKTPHDQSIR----LEDEFRFMLVRHWSLY 324


>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 184

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 352 SYKSSAVMCQCLAVTERFYTIFRGAESFCST 260
           SYK+S++  + +   E+F  +  G+ S C+T
Sbjct: 13  SYKTSSISPEVIVDLEKFLNLCEGSCSQCNT 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,716,394
Number of Sequences: 5004
Number of extensions: 29244
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)