Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_E06
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    42   4e-04
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    41   8e-04
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    39   0.003
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    33   0.17 
01_01_0418 - 3142659-3145622                                           28   6.3  

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 25/97 (25%), Positives = 49/97 (50%)
 Frame = -1

Query: 442 LDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKGLM 263
           LD + A+D ++   ++ V+  +GFP K ++W+  ++   S  +  N V        +G+ 
Sbjct: 456 LDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVR 515

Query: 262 QGSSLSPILYNLYTSQIYRHVTELWRK*GRLIPPLLE 152
           QG  LS +L+ L    + R + + + + G L  P+ E
Sbjct: 516 QGVPLSLLLFVLGAELLQRIINKAFHQ-GLLSKPINE 551


>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 24/83 (28%), Positives = 38/83 (45%)
 Frame = -1

Query: 454 ICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAF 275
           + + LD   A+D+V+   L ++L   GFP   + WI N+       +  + +        
Sbjct: 37  LIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLLHGIPGKWITCK 96

Query: 274 KGLMQGSSLSPILYNLYTSQIYR 206
           KGL QG  LSP L+ L    + R
Sbjct: 97  KGLRQGDPLSPYLFILVADVLQR 119


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 26/83 (31%), Positives = 36/83 (43%)
 Frame = -1

Query: 454  ICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAF 275
            I V LD   A+D+V    L ++L   GFP   + WI  +       +  N V        
Sbjct: 1052 IIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAVLLNGVPGRWICCK 1111

Query: 274  KGLMQGSSLSPILYNLYTSQIYR 206
            KGL+QG  LS  L+ L    + R
Sbjct: 1112 KGLLQGDPLSSYLFILVADVLQR 1134


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = -1

Query: 442 LDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKGLM 263
           +D+  AYD ++   L   L  LGF    +  +          I+ N       +  +G+ 
Sbjct: 257 IDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRINGELTDTVVPSRGIR 316

Query: 262 QGSSLSPILYNLYT 221
           QG  +SP L+ L T
Sbjct: 317 QGDPISPYLFLLCT 330


>01_01_0418 - 3142659-3145622
          Length = 987

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 388 LYSLGFPGKLLKWIFNMYFGRSLYIKYNN 302
           LY   F G++ + +FN+   R +Y++YNN
Sbjct: 404 LYKCNFSGQIPQDLFNLTQLRVIYLQYNN 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,045
Number of Sequences: 37544
Number of extensions: 307923
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)