Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_E06
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.73 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.73 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   0.96 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   3.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.0  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 292 GPKLAFKGLMQGSSLSPILYNLYTSQIYRH 203
           G     K  + G +LSP+  NLY S +  H
Sbjct: 247 GESFTVKNGIYGIALSPVTNNLYYSPLLSH 276


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -2

Query: 183 NEADLSHLFLSCPTFKFQRLILVTDIMKLMDFDENNQTKHGNSLANNPTRSALDSLL 13
           NE   S+L L+C  +     +L        ++D N +    + +ANN T   L  L+
Sbjct: 25  NEFGFSYL-LNCKNYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLM 80


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 292 GPKLAFKGLMQGSSLSPILYNLYTSQIYRH 203
           G     K  + G +LSP+  NLY S +  H
Sbjct: 242 GESFTLKNGICGMALSPVTNNLYYSPLASH 271


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 295 HGPKLAFKGLMQGSSLSPILYNLYTSQIYRH 203
           +G     +  + G +LSP+  NLY S +  H
Sbjct: 241 NGESFTLQSGIFGMALSPLTQNLYYSALSSH 271


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 259 GSSLSPILYNLYTSQIYRH 203
           G +LSP+  NLY S +  H
Sbjct: 256 GMALSPVTNNLYYSPLTSH 274


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 354 FKSFPGKPKEYSTLINW 404
           FK+F   PK Y+T +N+
Sbjct: 54  FKTFDKGPKNYTTPVNF 70


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 130 LKFKSRATQEEVG*VGLISSTIQSRVYIFVKYKGYTG 240
           L+F+        G +  ++ST +++ +  +K  GY G
Sbjct: 58  LRFRYECEGRSAGSIPGVNSTSENKTFPTIKIVGYKG 94


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 130 LKFKSRATQEEVG*VGLISSTIQSRVYIFVKYKGYTG 240
           L+F+        G +  ++ST +++ +  +K  GY G
Sbjct: 58  LRFRYECEGRSAGSIPGVNSTSENKTFPTIKIVGYKG 94


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 471 NNTFSYQSXTCKFGSII*GYRQNQ 542
           N+ F+Y S    +G I+  + QN+
Sbjct: 203 NDAFAYMSDELGYGLIVYSWEQNR 226


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 259 GSSLSPILYNLY 224
           G +LSP+ +NLY
Sbjct: 254 GMALSPVTHNLY 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,715
Number of Sequences: 438
Number of extensions: 4206
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)