Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_E02
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   6.1  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   6.1  

>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 150 KRPKLLFKINLKQTKGIRQXGGHIKGKTKL 61
           K P+L  ++ +K  KG+   G    GKT L
Sbjct: 153 KNPELFLRVGIKPPKGVLLYGPPGTGKTLL 182


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -3

Query: 311 LNLFIF*S*STTSVKLLIFCIIIK*NQSDCRKIIYNYNNTS*PG 180
           +N+ +  S +++S  L+ +C +   + +   + +  YNNT  PG
Sbjct: 112 VNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPG 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,162,976
Number of Sequences: 5004
Number of extensions: 16977
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)