Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_D21
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 156 3e-39
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.76
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 1.0
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 27 2.3
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 2.3
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 4.1
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 5.4
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 5.4
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 5.4
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 156 bits (378), Expect = 3e-39
Identities = 73/112 (65%), Positives = 85/112 (75%)
Frame = +1
Query: 250 KHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQ 429
K GFH+H+FGDNTNGCTSAG HFNPE + HG ++AVRHVGDLGN+E+ + G K +
Sbjct: 43 KRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFS 101
Query: 430 DSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 585
DS ISL G NSIIGRT+V+HA DDLG G E S TGNAG R ACGVIG+A
Sbjct: 102 DSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +3
Query: 138 KAVCVLRGD--VSGTVFFDQQDEKSPVVV 218
+AV VLRGD VSG V F+Q D+ S V V
Sbjct: 3 RAVAVLRGDSKVSGVVTFEQVDQNSQVSV 31
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 28.7 bits (61), Expect = 0.76
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = -2
Query: 615 TYEK*KYLNLSQANDSTSNTATSITSGLT*LMATE----SQVIRVSMDN*SATNDAVRSM 448
T++K + N + D+ S+ TS + G++ + + S + ++ ++ S+TND +R +
Sbjct: 492 TFDKAQLSNTEDSYDNISH-GTSYSEGVSSIHMVKGERGSNNLELTSESLSSTNDTIRRL 550
Query: 447 KRDLRIL 427
+RDL L
Sbjct: 551 QRDLLFL 557
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 311 LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKILRSLFM 451
L++T + + +PVLLY + ++ + L++ ES + + KIL +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 27.1 bits (57), Expect = 2.3
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 203 VTCCCFWRGPXX*LRVNTVSMCTNLVT 283
+ C CF +GP +N+V++C +++
Sbjct: 79 IDCICFTKGPGIGAPLNSVALCARMLS 105
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Frame = +3
Query: 549 WW-PYC-----LWSHWLG*DLNTFIFHMLGLVLQ 632
WW PY +WS W+ +L T FHM + LQ
Sbjct: 413 WWVPYLEYVRFMWSPWIIDNLGTVSFHMYVIYLQ 446
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 626 YQAQHMKNESI*ILAKPMTPQAI 558
Y +NES +LAKPMTP +
Sbjct: 618 YDPSTSENESASVLAKPMTPPGL 640
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 355 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 438
A R DL NI +ED V+ S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 317 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 418
STLK + + PV L A+ ++LR L ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = +1
Query: 373 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 552
D+ NI+ ++ + ++++ Q++ N + R + + L L H L+ G AG
Sbjct: 431 DIINIDIEKEKTIEEIAMGFIQVA----NETMCRPIRKLTESRGLDLSAHHLA-VFGGAG 485
Query: 553 GRIACGVIGLAKI 591
G+ AC + L I
Sbjct: 486 GQHACAIASLLNI 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,453
Number of Sequences: 5004
Number of extensions: 48509
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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