Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_D21
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 174 4e-44
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 169 1e-42
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 162 2e-40
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 129 2e-30
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 50 2e-06
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 33 0.20
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 4.2
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 5.6
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 5.6
03_06_0131 - 31900700-31900992,31901039-31901720 28 7.4
01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997 27 9.7
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 174 bits (424), Expect = 4e-44
Identities = 76/112 (67%), Positives = 86/112 (76%)
Frame = +1
Query: 247 GKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSI 426
G HGFH+H GD TNGC S G H+NP ++HG P RH GDLGN+ A ED GV + +
Sbjct: 158 GLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGED-GVANIHV 216
Query: 427 QDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 582
DSQI L GPNSIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 217 VDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 169 bits (412), Expect = 1e-42
Identities = 77/112 (68%), Positives = 85/112 (75%)
Frame = +1
Query: 247 GKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSI 426
G HGFHVH GD TNGC S G HFNP ++HG P RH GDLGNI A D GV V++
Sbjct: 40 GLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGAD-GVANVNV 98
Query: 427 QDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 582
DSQI L G +SIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 99 SDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 138 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQXLD*G 248
KAV VL V GT+FF Q+ + P V+G V L G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGD-GPTSVTGSVSGLKPG 40
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 162 bits (394), Expect = 2e-40
Identities = 73/117 (62%), Positives = 83/117 (70%)
Frame = +1
Query: 241 TKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKV 420
T G HGFH+HEFGD TNGC S G HFNP HG P VRH GDLGNI A + GV +
Sbjct: 88 TPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAE-GVAEA 146
Query: 421 SIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 591
+I D QI L GPNS++GR VVH DDLG GGHELS +TGNAGGR+ACGV+GL +
Sbjct: 147 TIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 129 bits (311), Expect = 2e-30
Identities = 58/90 (64%), Positives = 66/90 (73%)
Frame = +1
Query: 247 GKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSI 426
G HGFH+H FGD TNGC S G HFNP + HG PS RHVGDLGNI A +D GV + I
Sbjct: 50 GLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKD-GVADIFI 108
Query: 427 QDSQISLHGPNSIIGRTLVVHADPDDLGLG 516
+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 109 KDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Frame = +1
Query: 247 GKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSI 426
GKHG+ ++EFGD T G S G +NP P +GDLG +EA E G + S
Sbjct: 202 GKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEAGE-KGEAQFSA 254
Query: 427 QDSQISLHGPNSIIGRTLVVHA--DPDDLGLGGHELSKTTG 543
++ + +IGR++ ++A D D G+ ++++ G
Sbjct: 255 SKEKLKV---VDLIGRSIALYATEDRSDPGIAAAVIARSAG 292
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 253 HGFHVHEFGDNTNGCTSAG 309
HGFHVH G TNGC G
Sbjct: 51 HGFHVHALGGTTNGCMRNG 69
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 451 GPNSIIGRTLVVHADPDDLGLGG 519
GP + +GR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.3 bits (60), Expect = 5.6
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = +1
Query: 307 GAHFNPEKQDH--GGPSSAVRHVGD--LGNIE---AIEDSGVTKVSIQDSQISLHGPNSI 465
GA +PE H G V D L NI A+ G+ V+ D+++SL
Sbjct: 222 GASHDPEALLHIAQGSRGTYSFVDDDNLANIAGALAVCLGGLKTVAAVDTRVSLKAAELS 281
Query: 466 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 576
G +V D GG+E S G A G + GV+
Sbjct: 282 GGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 313
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 280 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 459
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 373 DLGNIEAIEDSGVTKVSIQDSQISLHGPNS 462
D+ ++ + DSG +I +S HGPNS
Sbjct: 120 DVDHLSILTDSGAVHRAISGEPVSEHGPNS 149
>01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997
Length = 387
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 277 GDNTNGCTSAGAHFNPEKQDHGGPSSAVRHV 369
G+N NG S G H N + G P S + +V
Sbjct: 111 GNNNNGYRSQGVHANESWRIPGQPDSCIENV 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,764
Number of Sequences: 37544
Number of extensions: 321517
Number of successful extensions: 823
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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