Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_D19
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944           93   6e-20
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254     93   6e-20
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907     93   6e-20
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124...    29   1.4  
07_03_0054 + 12848425-12848593,12850106-12850278                       27   5.6  
08_02_0946 + 22880399-22880600,22881588-22881650,22881786-228817...    26   7.4  
01_03_0025 + 11739930-11740493,11740820-11741020,11741143-117412...    26   7.4  
06_03_0375 + 20052687-20053214,20053943-20054110,20054272-200543...    26   9.8  

>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
          Length = 51

 Score = 93.1 bits (221), Expect = 6e-20
 Identities = 39/47 (82%), Positives = 44/47 (93%)
 Frame = +2

Query: 101 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 241
           +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 3   SHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
          Length = 51

 Score = 93.1 bits (221), Expect = 6e-20
 Identities = 39/47 (82%), Positives = 44/47 (93%)
 Frame = +2

Query: 101 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 241
           +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 3   SHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
          Length = 51

 Score = 93.1 bits (221), Expect = 6e-20
 Identities = 39/47 (82%), Positives = 44/47 (93%)
 Frame = +2

Query: 101 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 241
           +HKTF IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 3   SHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49


>09_02_0565 +
           10710770-10711003,10711368-10711527,10712277-10712477,
           10712564-10712628,10712740-10712767,10712847-10712923,
           10713023-10713109,10713572-10713622,10713857-10713937,
           10714125-10714346,10714424-10714517,10714608-10714748,
           10716383-10716444,10716519-10717106
          Length = 696

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 107 KTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKR 217
           K  IIKR+ AK+L+Q    P++  + TG     +AKR
Sbjct: 214 KETIIKREAAKRLEQTSEEPEYAPLPTGPGAVADAKR 250


>07_03_0054 + 12848425-12848593,12850106-12850278
          Length = 113

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 268 FNTFTSLQLELCPSPVTPLSVISNSVSCA 182
           F T+ S+  +L PSP + L V   S+SC+
Sbjct: 8   FTTYVSIVPDLRPSPRSHLCVNHGSISCS 36


>08_02_0946 +
           22880399-22880600,22881588-22881650,22881786-22881790,
           22882143-22882253,22882339-22882443,22882529-22882609,
           22883236-22883247,22883680-22883733,22884476-22884586,
           22884789-22884935
          Length = 296

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -2

Query: 283 FYYITFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPLRNGSVL 149
           FY     T T  Q  LCP P+T   +I N   C   YP  +  VL
Sbjct: 208 FYGQLVATITH-QSHLCPLPLTVQPIIWNYDHCLRLYPTPHTIVL 251


>01_03_0025 +
           11739930-11740493,11740820-11741020,11741143-11741235,
           11741355-11742125
          Length = 542

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 173 VRMRTGNTIRYNAKRRHWRRTKLKL 247
           ++ R    +R +  RRHWRR  L L
Sbjct: 75  IKARNSPLLRVSPFRRHWRRLSLSL 99


>06_03_0375 +
           20052687-20053214,20053943-20054110,20054272-20054354,
           20054541-20054610,20054973-20055077
          Length = 317

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 232 PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQF 128
           PSP  P +  ++  + A    LR G V F  FGQF
Sbjct: 53  PSPSEPTTAAASPATAAAAGALRVGIVGFGNFGQF 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,070,532
Number of Sequences: 37544
Number of extensions: 122741
Number of successful extensions: 267
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)