Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_D19
         (353 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    92   9e-20
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    92   9e-20
U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine rece...    28   2.2  
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    28   2.2  
AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical p...    27   5.0  
AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical...    27   5.0  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 92.3 bits (219), Expect = 9e-20
 Identities = 41/50 (82%), Positives = 45/50 (90%)
 Frame = +2

Query: 98  SAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 247
           SA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 2   SALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 92.3 bits (219), Expect = 9e-20
 Identities = 41/50 (82%), Positives = 45/50 (90%)
 Frame = +2

Query: 98  SAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 247
           SA K   IKRKLAKK KQNRP+PQWVRM+TGNT++YNAKRRHWRRTKLKL
Sbjct: 2   SALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein220 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 283 FYYIT-FNTFTSLQLELCPSPVTPLSVISNSVSCAHP 176
           FYYIT F  F  + + + P P      I  S+ C HP
Sbjct: 147 FYYITAFLFFYPIYITMPPGPEHRKDFILKSIPCLHP 183


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -2

Query: 244 LELCPSPVTPLSVISNSVSCAHPY----PLRNGSVLFQLFGQFALNNKR 110
           L++ P P++PLSV++N      PY    PL  GS     FGQ AL + R
Sbjct: 4   LQVVPPPISPLSVLANHPD--RPYEVLKPLGQGS-----FGQVALVSNR 45


>AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.8 protein.
          Length = 165

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 122 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 241
           K+K+ K +++   +P   +  TGNT   N ++RH R+ ++
Sbjct: 68  KKKVVKSVEKTARMPD--KPETGNTATGNPEKRHKRKKRV 105


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 274 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHP 176
           I F T T +   +C S ++ +  I  SV C++P
Sbjct: 72  IVFLTLTDMSATVCSSIISGVLYIKGSVFCSYP 104


>Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical
           protein F58A4.7c protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 262 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 146
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical
           protein F58A4.7b protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 262 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 146
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 305 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 344


>Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical
           protein F58A4.7a protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 262 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 146
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>U61952-10|AAQ01532.2|  217|Caenorhabditis elegans Hypothetical
           protein F42A9.9 protein.
          Length = 217

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 183 AQETLFDITLRGVTGEGQSSSCKLVNVLNV 272
           A   +FD+T+ G   +GQ  +C L+ V+ +
Sbjct: 23  ALSVIFDLTMIGAVKKGQMLNCLLIVVITI 52


>AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical
           protein Y43F8C.12 protein.
          Length = 1119

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 298 LTLQGFYYITFNTFTSLQLELCPSPVTPLSVISNS 194
           L L G++YI F   T +Q  L  +      +ISNS
Sbjct: 358 LILNGYFYIMFRMGTKIQTSLTAAVYKKTLLISNS 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,502,879
Number of Sequences: 27780
Number of extensions: 120653
Number of successful extensions: 263
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)