Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_D15
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.2  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.1  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   6.4  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 227  VVCILNKDRHFIY*KKKMSFTPPVLKKE 310
            V+C +   R+F+Y K+K+S    +LK E
Sbjct: 1058 VLCQMKNHRNFVYVKEKISLIMKILKSE 1085


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +2

Query: 5    DLNVVHIVRKNFKYKNCCNVLNNPYFKKKHFS 100
            D++   + RK+ ++K+C  V+ +P+ KKK+ +
Sbjct: 1133 DISSSQLKRKSTEFKDCPFVVLDPFLKKKNLT 1164


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +1

Query: 412 IEKRNDELMTKPLALQKGLEIQAYDLQVAGHRKTEDTKYSGLLQCSNGTILKPIIKE 582
           + ++  +L  + LAL   +    Y + +    +TED  Y  L  C NG +   I ++
Sbjct: 54  LNEKQKKLQARELALHARVSSHPYIITLHRVLETEDAIYVVLQYCPNGDLFTYITEK 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,192
Number of Sequences: 5004
Number of extensions: 49694
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)