Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_D15
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0281 + 26912419-26913099                                         27   8.7  
03_02_0415 - 8263459-8263611,8263788-8263919,8264841-8264936,826...    27   8.7  

>05_06_0281 + 26912419-26913099
          Length = 226

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 492 LQIVGLDFKPFLQGKGLRHQLVVA 421
           L +V L F P LQ + L HQ+VVA
Sbjct: 16  LHVVLLAFAPLLQARPLGHQVVVA 39


>03_02_0415 -
           8263459-8263611,8263788-8263919,8264841-8264936,
           8265021-8265137,8265352-8265435,8265517-8265577,
           8266217-8266266,8266544-8266633,8267539-8267757,
           8269207-8269262,8269469-8269546,8269707-8269811,
           8269925-8270069,8270310-8270388,8270470-8270537,
           8271550-8271626,8272676-8272712,8273107-8273232,
           8273770-8273805
          Length = 602

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +1

Query: 361 KRTKVRRQRSIYQVHYNIEKRNDELMTKPLALQKGLEIQAYDLQVAGHRKTEDTKYSGLL 540
           K TK  ++ SI Q   ++E+R  EL  + LAL+K  E++    Q+   R    +  SGL+
Sbjct: 405 KITKEAKENSILQA--SLERRKVELHKRRLALEK--EVENLRDQLQKERNLRVSLESGLM 460

Query: 541 QCSNG 555
               G
Sbjct: 461 NLRRG 465


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,714
Number of Sequences: 37544
Number of extensions: 283653
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)