Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_D15
         (600 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007441-1|AAH07441.1|  410|Homo sapiens S-phase kinase-associat...    29   9.4  
BC001441-1|AAH01441.1|  410|Homo sapiens S-phase kinase-associat...    29   9.4  
AY029177-1|AAK31593.1|  424|Homo sapiens F-box protein SKP2 prot...    29   9.4  
AB050981-1|BAB87202.1|  442|Homo sapiens SKP2-like protein type ...    29   9.4  
AB050980-1|BAB87201.1|  410|Homo sapiens SKP2-like protein type ...    29   9.4  
AB050979-1|BAB87200.1|  424|Homo sapiens SKP2-like protein type ...    29   9.4  

>BC007441-1|AAH07441.1|  410|Homo sapiens S-phase kinase-associated
           protein 2 (p45) protein.
          Length = 410

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -1

Query: 492 LQIVGLDFKPFLQGKGLRHQLVVAFLDIIVHLIDGPLSAHFSPFWSFRRIAHLELDLS 319
           L + G +  P + G+ L  Q V+AF       +D PL+ HFSPF    R+ H++L  S
Sbjct: 140 LDLTGKNLHPDVTGR-LLSQGVIAFR-CPRSFMDQPLAEHFSPF----RVQHMDLSNS 191


>BC001441-1|AAH01441.1|  410|Homo sapiens S-phase kinase-associated
           protein 2 (p45) protein.
          Length = 410

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -1

Query: 492 LQIVGLDFKPFLQGKGLRHQLVVAFLDIIVHLIDGPLSAHFSPFWSFRRIAHLELDLS 319
           L + G +  P + G+ L  Q V+AF       +D PL+ HFSPF    R+ H++L  S
Sbjct: 140 LDLTGKNLHPDVTGR-LLSQGVIAFR-CPRSFMDQPLAEHFSPF----RVQHMDLSNS 191


>AY029177-1|AAK31593.1|  424|Homo sapiens F-box protein SKP2
           protein.
          Length = 424

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -1

Query: 492 LQIVGLDFKPFLQGKGLRHQLVVAFLDIIVHLIDGPLSAHFSPFWSFRRIAHLELDLS 319
           L + G +  P + G+ L  Q V+AF       +D PL+ HFSPF    R+ H++L  S
Sbjct: 140 LDLTGKNLHPDVTGR-LLSQGVIAFR-CPRSFMDQPLAEHFSPF----RVQHMDLSNS 191


>AB050981-1|BAB87202.1|  442|Homo sapiens SKP2-like protein type
           gamma protein.
          Length = 442

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -1

Query: 492 LQIVGLDFKPFLQGKGLRHQLVVAFLDIIVHLIDGPLSAHFSPFWSFRRIAHLELDLS 319
           L + G +  P + G+ L  Q V+AF       +D PL+ HFSPF    R+ H++L  S
Sbjct: 140 LDLTGKNLHPDVTGR-LLSQGVIAFR-CPRSFMDQPLAEHFSPF----RVQHMDLSNS 191


>AB050980-1|BAB87201.1|  410|Homo sapiens SKP2-like protein type
           beta protein.
          Length = 410

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -1

Query: 492 LQIVGLDFKPFLQGKGLRHQLVVAFLDIIVHLIDGPLSAHFSPFWSFRRIAHLELDLS 319
           L + G +  P + G+ L  Q V+AF       +D PL+ HFSPF    R+ H++L  S
Sbjct: 140 LDLTGKNLHPDVTGR-LLSQGVIAFR-CPRSFMDQPLAEHFSPF----RVQHMDLSNS 191


>AB050979-1|BAB87200.1|  424|Homo sapiens SKP2-like protein type
           alpha protein.
          Length = 424

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -1

Query: 492 LQIVGLDFKPFLQGKGLRHQLVVAFLDIIVHLIDGPLSAHFSPFWSFRRIAHLELDLS 319
           L + G +  P + G+ L  Q V+AF       +D PL+ HFSPF    R+ H++L  S
Sbjct: 140 LDLTGKNLHPDVTGR-LLSQGVIAFR-CPRSFMDQPLAEHFSPF----RVQHMDLSNS 191


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,199,881
Number of Sequences: 237096
Number of extensions: 1636533
Number of successful extensions: 2560
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2560
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)