Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_D15
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72503-1|CAA96596.2|  617|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF036693-1|AAK29785.1|  391|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z69716-2|CAA93527.1|  474|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF003130-7|AAO38638.1|  247|Caenorhabditis elegans Dehydrogenase...    28   5.9  

>Z72503-1|CAA96596.2|  617|Caenorhabditis elegans Hypothetical
           protein C26C6.3 protein.
          Length = 617

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 388 SIYQVHYNIEKRNDELMTKPLALQKGL-EIQAYDLQVAGHRKTEDTKYSGLLQCSNGTIL 564
           S ++ H+N+E++  E + + L   K L   +++  +  GH   ED+K    +    GTI 
Sbjct: 31  SEFKEHFNVEEKQLETVEELLIKMKKLAHSRSFKGREFGHDAVEDSKKEVAISTQQGTIN 90

Query: 565 KPI 573
           K +
Sbjct: 91  KKV 93


>AF036693-1|AAK29785.1|  391|Caenorhabditis elegans Hypothetical
           protein C49A9.7 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 221 IPFVINILFAKLGKFCLSIVI*NHLPT-NVTNI*FNNVQKR*KSVFF*SMDYSKHYNNFY 45
           I F + I  A +G F +  +I  H    +VTN    N+     S+   +  +S  YN +Y
Sbjct: 66  ILFTLTIFLALMGNFTVMWIILYHRQMRSVTNYYLFNLAVADASISVFNTGFSWSYNYYY 125

Query: 44  I*NFSSQY 21
           +  F S Y
Sbjct: 126 VWKFGSFY 133


>Z69716-2|CAA93527.1|  474|Caenorhabditis elegans Hypothetical
           protein C04B4.2 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 414 DIIVHLIDGPLSAHFSPFWSFRRIAHLELDLS*IRSF 304
           D++V +  GPL  + +PF ++  + HL  +   IR+F
Sbjct: 16  DVLVKICTGPLFDNGTPFITYGCVLHLSSERGIIRTF 52


>AF003130-7|AAO38638.1|  247|Caenorhabditis elegans Dehydrogenases,
           short chain protein2, isoform b protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = -1

Query: 243 FKMQTTSDSFCN*YSICKVREILSINCH----LESFTY*RHKHMI*QRSKTLEKCFFLKY 76
           F M  TSD      S+ +V + L   C     + S +Y    HM   +S+ L  C FL +
Sbjct: 101 FLMDVTSDE-----SVGEVAKRLEKKCEQYGGMCSESYLFQHHM---KSRALNACTFLVF 152

Query: 75  GLFKTLQQFLYLKFFLTICT 16
             F T+QQ  YL   +T+ +
Sbjct: 153 CFFLTIQQQTYLGRVVTVAS 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,586,885
Number of Sequences: 27780
Number of extensions: 278480
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)