Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_D14
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    29   2.9  
11_02_0020 + 7429898-7430131,7432565-7432669,7434535-7434621,743...    28   6.7  
08_02_0238 + 14665813-14668798,14669088-14669125                       28   6.7  
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041...    28   6.7  
12_01_0613 + 5060150-5060320,5062255-5062359,5064057-5064143,506...    27   8.8  
06_02_0342 + 14789190-14789205,14789868-14789891,14789968-147901...    27   8.8  

>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 353 SRGFRSLGNDETKCPFIQQNSIISEAPKEMTEDIAEPATPYH 478
           S+  R  G D  K      N I  E+ K + E I EP TPYH
Sbjct: 6   SKKSRDRGRDRVKWNEENLNDI--ESTKPVREKITEPKTPYH 45


>11_02_0020 +
           7429898-7430131,7432565-7432669,7434535-7434621,
           7435188-7435241,7435338-7435483,7435593-7435719,
           7436200-7436208
          Length = 253

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 466 RRFRDVLGHFLRSFRNDRVLLNEGAFGFVISQRTKSTRYNRAIISVLLHQG 314
           R   DV+  FL   + +R L    A  FV+  +       R +   +LHQG
Sbjct: 48  RPLEDVVADFLARIQPERRLRFGAAINFVLKDKMMLRPAERLVAFTILHQG 98


>08_02_0238 + 14665813-14668798,14669088-14669125
          Length = 1007

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 197 SPTSTSFISVLCHRLHKNRKMPCPFLGSLNQ 289
           SP++T F ++LC +LH +   P  FLGS  Q
Sbjct: 45  SPSNTDFQTLLCLKLHLSND-PGGFLGSWKQ 74


>02_04_0621 -
           24502383-24502476,24502532-24504015,24504125-24504177,
           24504871-24504984,24505068-24505202,24505960-24506055,
           24506692-24506827
          Length = 703

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 461 PATPYHYENFFHDQINAK 514
           PATP   E  +H+Q+NAK
Sbjct: 101 PATPCKNEEIYHEQVNAK 118


>12_01_0613 +
           5060150-5060320,5062255-5062359,5064057-5064143,
           5064265-5064318,5064402-5064547,5064651-5064804,
           5064891-5065028,5065454-5065527,5065615-5065756,
           5066396-5066474,5067326-5067423
          Length = 415

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 469 SRRFRDVLGHFLRSFRNDRVLLNEGAFGFVISQRTKSTRYNRAIISVLLHQ 317
           SR   D+   FL  F  +R L    A GF++  +       R I   +LHQ
Sbjct: 26  SRPLADIAADFLARFPLERRLRVGAALGFLLEDKKMLHPTGRLIAFAILHQ 76


>06_02_0342 +
           14789190-14789205,14789868-14789891,14789968-14790128,
           14790218-14790335,14790658-14790735,14790819-14790938,
           14791380-14791430,14791576-14791883
          Length = 291

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 266 PFLGSLNQAFVKNYGATLMKQYGNYCPIISRGFR 367
           PF G+   A V+ Y   L  Q G+YCP +  GFR
Sbjct: 170 PFAGTSFGAGVQGYMDLL--QQGSYCPELMSGFR 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,928
Number of Sequences: 37544
Number of extensions: 297573
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)