Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_D13
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 277 1e-75
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 277 1e-75
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 277 1e-75
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 0.87
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 4.6
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 8.1
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 277 bits (678), Expect = 1e-75
Identities = 127/183 (69%), Positives = 153/183 (83%)
Frame = +2
Query: 32 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 212 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 391
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 392 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAXKVLPSSNRGMVGIVAGGGRIDKPIL 571
GDRG L R+SGN+ ++GH+ D +TRVKLPSGA KV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 572 KXG 580
K G
Sbjct: 180 KAG 182
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 277 bits (678), Expect = 1e-75
Identities = 127/183 (69%), Positives = 153/183 (83%)
Frame = +2
Query: 32 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 212 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 391
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 392 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAXKVLPSSNRGMVGIVAGGGRIDKPIL 571
GDRG L R+SGN+ ++GH+ D +TRVKLPSGA KV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 572 KXG 580
K G
Sbjct: 180 KAG 182
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 277 bits (678), Expect = 1e-75
Identities = 127/183 (69%), Positives = 153/183 (83%)
Frame = +2
Query: 32 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 212 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 391
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+E K
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 392 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAXKVLPSSNRGMVGIVAGGGRIDKPIL 571
GDRG L R+SGN+ ++GH+ D +TRVKLPSGA KV+PSS RG+VGIVAGGGRIDKP+L
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLL 179
Query: 572 KXG 580
K G
Sbjct: 180 KAG 182
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 28.3 bits (60), Expect = 0.87
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = -3
Query: 579 PXFKIGLSIRP-P--PATIPTMPLLLDGRTXLAPDGSFTLVRLASGLCPITVAKFPEARA 409
P + + + P P PAT+P P F +L SGL V+ +P+
Sbjct: 231 PDLNVNVDLSPFPNLPATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELT 290
Query: 408 RRPLSPIFXSRL 373
+ +P SRL
Sbjct: 291 QLESNPDSFSRL 302
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 402 PLSPIFXSRLHTMVPSGIAPTGITFPTSRVAFF 304
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 53 QRKGAGSVFVSHTKKRKGAPKLRSLD 130
+R+G+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,046
Number of Sequences: 5004
Number of extensions: 50649
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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