Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_D13
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      275   2e-74
07_01_1201 - 11419851-11419913,11420090-11420311                       32   0.29 
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.0  
03_03_0091 - 14371528-14372661                                         29   2.0  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    29   3.6  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   3.6  
04_01_0618 - 8094991-8097288                                           28   6.2  
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922     28   6.2  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  275 bits (674), Expect = 2e-74
 Identities = 123/183 (67%), Positives = 152/183 (83%)
 Frame = +2

Query: 32  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 212 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKM 391
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 392 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAXKVLPSSNRGMVGIVAGGGRIDKPIL 571
           GDRG  ARASG++A VI HNPD   +R+KLPSGA K++PSS R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPML 180

Query: 572 KXG 580
           K G
Sbjct: 181 KAG 183


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -3

Query: 558 SIRPPPATIPTMPLLLDGRTXLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFXS 379
           ++ PPP  +P +P     R+   P G        +G  P        A  R+P +P+F S
Sbjct: 12  ALLPPPPPLPALPQGQQWRST-GPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70

Query: 378 RL 373
           R+
Sbjct: 71  RV 72


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 418 LWKLRHCDWT 447
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>03_03_0091 - 14371528-14372661
          Length = 377

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = -3

Query: 546 PPATIPTMPLLLDGRTXLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFXSRL 373
           PPA  P      D      P G+  T      G+ P + A    A A    L+P+F   +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313

Query: 372 HTMVPSGIAPTGITFP 325
             M+ +G+AP  +  P
Sbjct: 314 RAMLTAGMAPPSLEPP 329


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 549 PPPATIPTMPLLLDGRTXLAP-DGSFTLVRL-ASGLCPITVAKFPEARARRPLSP 391
           PPPA++P+       R   +P  G+  L+RL   G CP   +    ARA R +SP
Sbjct: 16  PPPASLPSTACTSSSRRRASPWGGAGRLIRLRLRGHCPSPAS----ARAARVVSP 66


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 449 CVQSQWRSFQRHVPDDLYHPFSXQDCTQWY 360
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>04_01_0618 - 8094991-8097288
          Length = 765

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 223 RSIQVQDKEGALHCSRRALHRPICLLW 303
           R  Q+ D++  + C+ R   +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460


>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
          Length = 147

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 449 NPDAKRTRVKLPS--GAXKVLPSSNRGMVGIVAGGGRIDKPI 568
           +P + RTR   PS  GA K    ++   +G+  GG R+  PI
Sbjct: 45  SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,731,047
Number of Sequences: 37544
Number of extensions: 362009
Number of successful extensions: 981
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)