Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_D08
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248...    29   1.9  
07_01_0569 - 4223494-4224261,4224770-4225090                           29   2.5  
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269           27   5.8  
09_06_0232 - 21737299-21739233                                         27   7.6  
05_04_0371 + 20723314-20723838                                         27   7.6  

>09_04_0246 -
           16024454-16024529,16024635-16024720,16024805-16024894,
           16025349-16025435,16026112-16026229,16026852-16026982,
           16027619-16027909,16028000-16028124,16028209-16028334,
           16028452-16028487,16028599-16028902
          Length = 489

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 289 DSCSEEVIEEHSLNTDTNNLQIEESGKKKPXGISSVTLRSXNKNQDHP 432
           D C  +++E+ +L+ D N +   +   K   GIS  T R+ N ++  P
Sbjct: 413 DRCVTQMLEKQNLSEDCNQMISLKFSVKTRGGISEATTRTINTDKFTP 460


>07_01_0569 - 4223494-4224261,4224770-4225090
          Length = 362

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 277 ENDCDSCSEEV-IEEHSLNTDTNNLQIEES 363
           EN+C   S  V   EHS+NTDT ++ +  S
Sbjct: 251 ENECSVASCSVNFSEHSMNTDTQSVGVRNS 280


>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
          Length = 658

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 212 ISAITRLHNMPSGQFIRWNLEKPQ*T-VIYIHNA 114
           + A+TR+ ++P G+ + +  EKP  T V+Y+  A
Sbjct: 237 LQAVTRVKDLPPGEDLAFKSEKPPGTSVLYVDKA 270


>09_06_0232 - 21737299-21739233
          Length = 644

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 144 WFFEIPSDKLSRWHIMEACYGRNSS*HK 227
           WF +IP   +  W+ M +CY +    H+
Sbjct: 299 WFEQIPEKSIISWNAMISCYVQGGRFHE 326


>05_04_0371 + 20723314-20723838
          Length = 174

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 437 RCGWSWFLLXDRRVT-DEMPXGFF 369
           + G SW+LL DRR+T D+M    F
Sbjct: 24  KSGTSWYLLKDRRITRDKMDKKLF 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,444,171
Number of Sequences: 37544
Number of extensions: 203013
Number of successful extensions: 431
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)