Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_D01
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    29   0.42 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   5.2  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   6.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   6.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   6.9  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    24   9.1  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 64  EIMPLTADVAAQQVQERLRSLH-RLIYDIEAERSRNEQ 174
           E++    D+ ++ + E LR    +L+Y+IEAE  +N+Q
Sbjct: 692 EVLDEEVDLVSEPIPEPLRERQSQLLYEIEAEECQNKQ 729


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 221 RVLMIHQDLPNKFRSLKVYINR 286
           +++++ + +PN F+SLK  +NR
Sbjct: 544 KLILLLEGIPNYFKSLKAELNR 565


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 111 FLYLLCSNVSCERHYFTIFDSFQRQIYSVDPA 16
           ++Y+  S + C   +FTIF++    I +  PA
Sbjct: 143 YIYVAVSFIYCVMAFFTIFNNHVYTIETASPA 174


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 191 SMASMHCSLRDLSASIS*INLCNDLNLSCT 102
           S  S H S    ++S S  +L ND++LSC+
Sbjct: 178 SSVSSHSSPYSTTSSTSLYSLYNDISLSCS 207


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 76  LTADVAAQQVQERLRSLHRLIYDIEAERS 162
           L AD+   ++ + L+  H+LIY + +E+S
Sbjct: 122 LFADIRFIKLFDSLKEFHKLIYQLISEKS 150


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 108 LYLLCSNVSCERHYFTIFDSFQRQI 34
           +++  S  SC+RH   IF  FQ  I
Sbjct: 154 IHVTLSRSSCDRHQADIFSCFQDPI 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,884
Number of Sequences: 5004
Number of extensions: 26679
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)