Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_D01
(443 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00064-5|AAN84796.1| 237|Caenorhabditis elegans Hypothetical pr... 27 4.6
U00064-4|AAN84795.1| 232|Caenorhabditis elegans Hypothetical pr... 27 4.6
U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 27 8.1
U39645-6|AAA80366.1| 368|Caenorhabditis elegans Heat shock prot... 27 8.1
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 27 8.1
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 27 8.1
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 27 8.1
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 27 8.1
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 27 8.1
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 27 8.1
>U00064-5|AAN84796.1| 237|Caenorhabditis elegans Hypothetical
protein ZC155.5b protein.
Length = 237
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 295 LLSPIYINF*AAKLVGKILMNHQHSKEIL*IFQLSVWHLCTVHCET 158
L SP+Y +F A +G + + ++ K + + + HLC C+T
Sbjct: 128 LTSPVYTSFNRAAAIGWMAVRQKNMKYMHVGCTIRLCHLCDPKCQT 173
>U00064-4|AAN84795.1| 232|Caenorhabditis elegans Hypothetical
protein ZC155.5a protein.
Length = 232
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 295 LLSPIYINF*AAKLVGKILMNHQHSKEIL*IFQLSVWHLCTVHCET 158
L SP+Y +F A +G + + ++ K + + + HLC C+T
Sbjct: 123 LTSPVYTSFNRAAAIGWMAVRQKNMKYMHVGCTIRLCHLCDPKCQT 168
>U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical
protein F07E5.1 protein.
Length = 455
Score = 26.6 bits (56), Expect = 8.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 227 LMIHQDLPNKFRSLKVYINRA*QLPNKRKDYLELHC--QGFTRYVQLRMNVEFRLVTRVT 400
++I Q L +K LK YI+ A + N+ Y+++HC G Y L +E + R T
Sbjct: 179 VIIGQKLKHK---LKAYIDHAYSVLNQPSFYVDVHCNEDGLRTYEFLENAIEDVKIRRTT 235
>U39645-6|AAA80366.1| 368|Caenorhabditis elegans Heat shock protein
protein 43 protein.
Length = 368
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 194 ELKNLQDLLRVLMIHQDLPNKFRSLKVYINRA*QLP 301
++K L D L + H+D+ +K K+Y R QLP
Sbjct: 129 QVKTLDDTLMIEGRHEDIRDKDNFTKMYFVRKYQLP 164
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 73 PLTADVAAQQVQERLRSLHRLIYDIEAERSRNEQCIDA 186
P ++A Q+ ER+ + R I +IEA R E DA
Sbjct: 2903 PKEGIISATQLPERMANAGRRIAEIEAPRPAREDAPDA 2940
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 73 PLTADVAAQQVQERLRSLHRLIYDIEAERSRNEQCIDA 186
P ++A Q+ ER+ + R I +IEA R E DA
Sbjct: 2820 PKEGIISATQLPERMANAGRRIAEIEAPRPAREDAPDA 2857
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 73 PLTADVAAQQVQERLRSLHRLIYDIEAERSRNEQCIDA 186
P ++A Q+ ER+ + R I +IEA R E DA
Sbjct: 3141 PKEGIISATQLPERMANAGRRIAEIEAPRPAREDAPDA 3178
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 73 PLTADVAAQQVQERLRSLHRLIYDIEAERSRNEQCIDA 186
P ++A Q+ ER+ + R I +IEA R E DA
Sbjct: 3141 PKEGIISATQLPERMANAGRRIAEIEAPRPAREDAPDA 3178
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 73 PLTADVAAQQVQERLRSLHRLIYDIEAERSRNEQCIDA 186
P ++A Q+ ER+ + R I +IEA R E DA
Sbjct: 3141 PKEGIISATQLPERMANAGRRIAEIEAPRPAREDAPDA 3178
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 73 PLTADVAAQQVQERLRSLHRLIYDIEAERSRNEQCIDA 186
P ++A Q+ ER+ + R I +IEA R E DA
Sbjct: 2836 PKEGIISATQLPERMANAGRRIAEIEAPRPAREDAPDA 2873
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,402,678
Number of Sequences: 27780
Number of extensions: 149324
Number of successful extensions: 386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -