Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_C23
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 105 4e-24
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 98 8e-22
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 67 2e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 2e-12
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 56 3e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 55 1e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 54 1e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 2e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 50 2e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 48 9e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 47 2e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 47 3e-06
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 46 4e-06
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 45 8e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 45 1e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 45 1e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 45 1e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 44 2e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 42 6e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 6e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 41 2e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 37 0.003
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 36 0.004
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.33
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.58
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.3
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.8
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 27 1.8
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.3
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 5.4
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 25 7.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 9.5
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 105 bits (253), Expect = 4e-24
Identities = 47/68 (69%), Positives = 58/68 (85%)
Frame = +3
Query: 447 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDE 626
LGD +N +CHACIGGT VR+D+ L++GVHVVVGTPGRV+DMI RRAL + +++FVLDE
Sbjct: 110 LGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDE 169
Query: 627 ADEMLSXG 650
ADEMLS G
Sbjct: 170 ADEMLSRG 177
Score = 102 bits (244), Expect = 5e-23
Identities = 48/55 (87%), Positives = 55/55 (100%)
Frame = +2
Query: 287 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 451
RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALG
Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALG 111
Score = 82.2 bits (194), Expect = 6e-17
Identities = 34/50 (68%), Positives = 45/50 (90%)
Frame = +1
Query: 130 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 279
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPIL 54
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 98.3 bits (234), Expect = 8e-22
Identities = 42/68 (61%), Positives = 53/68 (77%)
Frame = +3
Query: 447 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDE 626
LGDH+N +CHACIGGT+V DI++L+ G HVV GTPGRV DMI RR L +K+ +LDE
Sbjct: 112 LGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDE 171
Query: 627 ADEMLSXG 650
ADE+L+ G
Sbjct: 172 ADELLNQG 179
Score = 91.9 bits (218), Expect = 7e-20
Identities = 46/57 (80%), Positives = 50/57 (87%)
Frame = +2
Query: 281 KXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 451
K RDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALG
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALG 113
Score = 59.7 bits (138), Expect = 4e-10
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +1
Query: 130 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 285
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +G
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG 58
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 67.3 bits (157), Expect = 2e-12
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +3
Query: 447 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDE 626
LG H+N K GGT +R+DI +L VH+VVGTPGRV D+ + + FV+DE
Sbjct: 135 LGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDE 194
Query: 627 ADEMLS 644
AD++LS
Sbjct: 195 ADKLLS 200
Score = 61.7 bits (143), Expect = 9e-11
Identities = 30/60 (50%), Positives = 41/60 (68%)
Frame = +2
Query: 272 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 451
+A RD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG
Sbjct: 77 IALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLG 136
Score = 43.6 bits (98), Expect = 3e-05
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = +1
Query: 82 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 249
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 250 IQQRAIMPCIQG 285
IQ+ +I + G
Sbjct: 70 IQEESIPIALSG 81
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 66.9 bits (156), Expect = 2e-12
Identities = 30/60 (50%), Positives = 47/60 (78%)
Frame = +2
Query: 272 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 451
L++ R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G
Sbjct: 149 LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 208
Score = 49.6 bits (113), Expect = 4e-07
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3
Query: 537 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 641
+V+GTPG V D++ RR L A IK+FVLDEAD ML
Sbjct: 233 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNML 267
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +1
Query: 169 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 267
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 56.4 bits (130), Expect = 3e-09
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +3
Query: 477 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXG 650
A GG ++R IRQ++ G ++ TPGR+ D+I R + IK VLDEAD ML G
Sbjct: 288 AVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMG 345
Score = 29.9 bits (64), Expect = 0.33
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 18/72 (25%)
Frame = +2
Query: 272 LASKXRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQA----LIL 397
+ + RD++A AQ+G+GKTA F IL Q R +A LIL
Sbjct: 202 IVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLIL 261
Query: 398 APTRELAQQIQK 433
APTREL QI +
Sbjct: 262 APTRELVCQIHE 273
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 54.8 bits (126), Expect = 1e-08
Identities = 27/58 (46%), Positives = 41/58 (70%)
Frame = +2
Query: 287 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG*SL 460
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G S+
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI 141
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 447 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLD 623
+G + + +GG ++ L HV+V TPGR+ D + + +K ++D
Sbjct: 137 IGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMD 196
Query: 624 EADEML 641
EAD +L
Sbjct: 197 EADRLL 202
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 148 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 267
D+ ++ +TF ++ + +EL GF+ P+ IQQ AI
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAI 77
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.4 bits (125), Expect = 1e-08
Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 6/62 (9%)
Frame = +2
Query: 272 LASKXRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQK 433
LA + +D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+
Sbjct: 47 LALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYN 106
Query: 434 VV 439
V+
Sbjct: 107 VL 108
Score = 34.7 bits (76), Expect = 0.012
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 172 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG 285
+TF D NL L R I+ FEKP+++Q I ++G
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEG 51
Score = 32.3 bits (70), Expect = 0.062
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 537 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXG 650
+V+ TP R + L + +K V+DEAD MLS G
Sbjct: 143 IVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFG 180
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 53.6 bits (123), Expect = 2e-08
Identities = 25/64 (39%), Positives = 34/64 (53%)
Frame = +3
Query: 459 LNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 638
L +C + +GG E Q+ G H+VV TPGR+ D + RR + V+DEAD M
Sbjct: 352 LGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRM 411
Query: 639 LSXG 650
L G
Sbjct: 412 LDMG 415
Score = 39.9 bits (89), Expect = 3e-04
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 8/56 (14%)
Frame = +2
Query: 287 RDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQ 430
+D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.4 bits (115), Expect = 2e-07
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +2
Query: 290 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ 430
DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+
Sbjct: 90 DVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIK 136
Score = 48.8 bits (111), Expect = 7e-07
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Frame = +3
Query: 486 GGTNVREDIRQLES---GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 641
GG N+++D+ + H+VV TPGR+ ++ + L N++K FVLDE D++L
Sbjct: 156 GGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLL 210
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/37 (54%), Positives = 21/37 (56%)
Frame = +1
Query: 178 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGT 288
F D LK ELLR I GFE PS +QQ I I GT
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGT 89
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 48.4 bits (110), Expect = 9e-07
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Frame = +2
Query: 272 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVV 439
L + RDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 102 LLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVV 159
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 477 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXG 650
A +GG ++ E L +VV TPGR + L ++I+ V DEAD + G
Sbjct: 172 AIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMG 229
Score = 33.9 bits (74), Expect = 0.020
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 40 IXSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPG--TLDTDWDQVVETFDDMNLKEELLR 213
I ++ + + +N +D G+Y ++ T + F M L + LLR
Sbjct: 23 IATDNQKDKHENVGENVSDEDDGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLR 82
Query: 214 GIYAYGFEKPSAIQQRAIMPCIQG 285
I+ GF+ P+ IQ++ I ++G
Sbjct: 83 AIFKKGFKAPTPIQRKTIPLLLEG 106
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/58 (44%), Positives = 37/58 (63%)
Frame = +2
Query: 287 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG*SL 460
R+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG +L
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANL 102
Score = 44.8 bits (101), Expect = 1e-05
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 447 LGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA----NTIKLF 614
LG +LN K +GG ++ L HVVV TPGR+ D+I IK
Sbjct: 98 LGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFL 157
Query: 615 VLDEADEMLS 644
V+DEAD +LS
Sbjct: 158 VMDEADRLLS 167
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.8 bits (106), Expect = 3e-06
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +2
Query: 275 ASKXRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQI 427
AS D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI
Sbjct: 156 ASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQI 208
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 462 NAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHAN--TIKLFVLDEADE 635
N + + GG V++ R L HVVV TPGR++ +I L N IK VLDEAD
Sbjct: 220 NIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADR 279
Query: 636 ML 641
+L
Sbjct: 280 LL 281
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 46.4 bits (105), Expect = 4e-06
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 474 HACI-GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXG 650
+ C+ GG IR L GV + + TPGR+ DM+ + + VLDEAD ML G
Sbjct: 226 NTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMG 285
Score = 35.9 bits (79), Expect = 0.005
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 272 LASKXRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKV 436
+A RD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 155 MAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQE 214
Query: 437 VIALG*SLEC*MPCLH 484
G S C++
Sbjct: 215 CTKFGKSSRIRNTCVY 230
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 169 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 264
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 45.2 bits (102), Expect = 8e-06
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 459 LNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR---RALHANTIKLFVLDEA 629
LN + GG +++ I L+ G +VV TPGR+ D+++ R + + VLDEA
Sbjct: 518 LNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEA 577
Query: 630 DEMLSXG 650
D M G
Sbjct: 578 DRMFDLG 584
Score = 35.1 bits (77), Expect = 0.009
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Frame = +2
Query: 287 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQI 427
RDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 154 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTR 291
D + V ++ L + + I + G+EKP++IQ +AI P I R
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI-PAITSGR 456
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 456 HLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEAD 632
H C+ IGG + + ++ GV++++GTPGR+ D + AL + ++ VLDE D
Sbjct: 246 HWIVSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGD 304
Query: 633 EMLSXG 650
++ G
Sbjct: 305 RLMDMG 310
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Frame = +2
Query: 272 LASKXRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQ 430
L + +D +AQ+G+GKT + + I+Q++ T A+I+APTREL QQI
Sbjct: 174 LNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIY 233
Query: 431 KVVIALG*SLEC*MPCLHWWHQC 499
V L + P HW C
Sbjct: 234 NVANKLNNN-----PLSHWIVSC 251
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Frame = +2
Query: 275 ASKXRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVI 442
A K RD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLV 132
Query: 443 ALG 451
+G
Sbjct: 133 KIG 135
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 483 IGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSXG 650
IGG N +E+ +L S ++++V TPGR+ I + + +++ +LDEAD +L G
Sbjct: 146 IGGNNYKEEKERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMG 201
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 462 NAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML 641
N K GG E R ++ V++GTPGR+ D+I ++ + + VLDEAD ML
Sbjct: 264 NLKAVVVYGGAPKSEQARAAKNA-SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRML 322
Query: 642 SXG 650
G
Sbjct: 323 DTG 325
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +2
Query: 287 RDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQ 424
RDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQ 251
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 44.0 bits (99), Expect = 2e-05
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +2
Query: 272 LASKXRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVI 442
LA +D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V
Sbjct: 292 LALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVAT 351
Query: 443 ALG*SLEC*MPCL 481
+ S M CL
Sbjct: 352 KIA-SFTDIMVCL 363
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 480 CIGGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSXG 650
CIGG +++ ++L +V+ TPGR D M + I++ V+DEAD ML G
Sbjct: 364 CIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDG 421
Score = 32.7 bits (71), Expect = 0.047
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 175 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 339
+F MNL +L+G+ GFE P+ IQ + I + G ++ + K F+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFI 314
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 42.3 bits (95), Expect = 6e-05
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 483 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSXG 650
IGG N R + +L GV+++V TPGR+ D + + ++ V+DEAD +L G
Sbjct: 196 IGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIG 252
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 169 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTRCYRSSPVRNWKNCYFL 339
+E F D+ L E + + I GFE + IQ+R+I P + G ++ + K FL
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
Score = 34.7 bits (76), Expect = 0.012
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +2
Query: 287 RDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQI 427
RDV+ A++G+GKT F +I +L + R +I++PTRELA QI
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQI 177
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 42.3 bits (95), Expect = 6e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +2
Query: 287 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 433
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 498 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXG 650
++E +L + +GTP R+ I + L ++ FV+DEAD + G
Sbjct: 156 IQEKAPKLREKYDMCIGTPMRLVQAI-QTGLSFEKVEFFVMDEADRLFEPG 205
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +2
Query: 281 KXRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 436
K +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V
Sbjct: 37 KNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +3
Query: 522 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSXG 650
E VV+GTPGR+ +M++ + + +++ +LDEAD ++ G
Sbjct: 130 EKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMG 170
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +2
Query: 290 DVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQK 433
DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 175 DVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAK 223
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 522 ESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEML 641
E + V+V TPGR+ D I + ++ V+DEAD +L
Sbjct: 258 ECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLL 298
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 474 HACIGGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSXG 650
+A G + +RE+ ++++ TPGR+ D + R L + + F+LDEAD ++ G
Sbjct: 145 YAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMG 204
Score = 33.1 bits (72), Expect = 0.036
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +2
Query: 290 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQI 427
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 471 CHACIGGTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 638
C I G N R + +L S + ++ + + R + A+T K+ +LDEAD M
Sbjct: 76 CARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAM 132
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.1 bits (62), Expect = 0.58
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 293 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVI 442
VI + +GK+ + I ILQ + + A + PT+ LAQ +K +I
Sbjct: 329 VIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLAQDQKKSLI 377
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 142 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 234
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 314 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 430
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 145 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCI 279
LDT+W V + NL+ + + I + F PS I + MP +
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSL 228
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 346 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 447
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 119 DLREWTLGHLTPT 157
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 139 QGPFPEVHRNYLDPSMAHFWNPLANL 62
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 10 GSATAVETCLIXSERRSEDWPEDSKNGPSKDQGSYDGPPGMDP 138
G T V+ C++ + SED ED + P++ S + DP
Sbjct: 268 GLCTFVDFCIVPLDLVSEDEEEDEEEEPAESNQSDNNVLRNDP 310
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 148 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGTR 291
DTDWD +V + D++L+ RGI A G + + + P + +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKK 661
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,392
Number of Sequences: 5004
Number of extensions: 64613
Number of successful extensions: 258
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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