Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_C13
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   6.7  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   8.8  

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -2

Query: 491 CTSPLKLALSKCALILRR*KLGVTDVGSXRSGDGLSDTPNGSASFQYS-----VDLFDIV 327
           C+   KLA     LI    K       +      +SDT NGS+S Q S     V+  D++
Sbjct: 581 CSQTWKLAQRSIVLIENTLKGKTNSQSTSEFVSPISDTENGSSSQQVSEAKDIVEPSDVL 640

Query: 326 *KVTKWAIIP 297
            ++ K+ ++P
Sbjct: 641 DELQKFDLLP 650


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 9   VTTLSQGRSTSHFSQQVTNRCDLSWIQPFN 98
           V +L +  S     + ++  CDLSWI P N
Sbjct: 498 VKSLDKSSSEVIIDEVISLVCDLSWIYPSN 527


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 234 VHFPLYLRSFLYIRHSNSYHCRNNSPFR 317
           +H  +  + FLY RH +S    +N+P R
Sbjct: 16  IHSIIKTKKFLYCRHYSSKSFIDNAPLR 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,785
Number of Sequences: 5004
Number of extensions: 43567
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)