Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_C13
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    29   2.2  
11_06_0347 + 22555087-22555943,22556638-22558783                       27   8.8  
11_06_0337 - 22454281-22456399,22458520-22459388                       27   8.8  
01_05_0380 - 21633505-21634563,21634626-21634677,21636263-216363...    27   8.8  

>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -3

Query: 229 LLFSCIGCHRELAIRTPKTGDDSMIVSSSHIMRYNTNRR-PPAFWLNGCIHERSHLLVTC 53
           ++F C     E  I   + G  S    S  + R NTN+  P A WLN   H R    +  
Sbjct: 489 VVFECPEDEAESIIVIDEKGSTSAATLSKAVARANTNQAGPAAAWLNN--HMRWGFAIVL 546

Query: 52  *EKCDVD 32
             +CD D
Sbjct: 547 -RRCDTD 552


>11_06_0347 + 22555087-22555943,22556638-22558783
          Length = 1000

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 139  YEKMTLSSSRHQFLAFESQAPDDIQYK 219
            Y    LSS +  FL F SQAP+D + K
Sbjct: 941  YGLENLSSLQQVFLTFSSQAPEDAKEK 967


>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 139  YEKMTLSSSRHQFLAFESQAPDDIQYK 219
            Y    LSS +  FL F SQAP+D + K
Sbjct: 936  YGLENLSSLQQVFLTFSSQAPEDAKEK 962


>01_05_0380 -
           21633505-21634563,21634626-21634677,21636263-21636310,
           21636349-21637289,21638737-21638982
          Length = 781

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 21  SQGRSTSHFSQQVTNRCDLSWIQPFNQNAGG 113
           S  RSTS  SQ     CD+   +PFN  + G
Sbjct: 70  SLARSTSAASQSQVYGCDMPLFEPFNVPSNG 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,466
Number of Sequences: 37544
Number of extensions: 268688
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)