Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_C13
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   4.3  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.9  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 130 NA*YEKMTLSSSRHQFLAFESQAPDDIQYKRRGGVFISHCICV 258
           N   ++   S +R+Q L  E +   +    RR  + I+H +C+
Sbjct: 5   NGEVKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 47


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 214 IGCHRELAIRTPKTGDDSMIVSSS 143
           +GC  E  + TP+TG +    SSS
Sbjct: 1   MGCLCECDLATPRTGTNCSSGSSS 24


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 494 MCTSPLKLALSKCALILRR 438
           M ++P+K ALS C  ++ R
Sbjct: 76  MDSNPIKTALSVCKSLIER 94


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 145 SHIMRYNTNRRPPAFWL 95
           S +  Y+T+ R PAF++
Sbjct: 406 SALQSYSTSMRDPAFYM 422


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 145 SHIMRYNTNRRPPAFWL 95
           S +  Y+T+ R PAF++
Sbjct: 406 SALQSYSTSMRDPAFYM 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,174
Number of Sequences: 438
Number of extensions: 3020
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)