Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_C12
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    70   1e-13
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    28   0.38 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   1.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   1.5  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    26   1.5  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   2.7  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   3.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   4.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   4.7  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    24   6.3  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    24   6.3  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   8.3  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 69.7 bits (163), Expect = 1e-13
 Identities = 35/78 (44%), Positives = 46/78 (58%)
 Frame = +2

Query: 74  SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNPFLSGFIS 253
           S L   +  +   Y   T   LK IDA+L ++ +   +QFGY  LVGT+PFN FLSGFIS
Sbjct: 5   SGLFLPLSSVITSYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFIS 64

Query: 254 TVSCFVLGVCLRLQLIQK 307
            V  FV+ V  R+ L Q+
Sbjct: 65  CVGQFVITVGFRMALTQQ 82


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +2

Query: 95  PKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNPF 235
           PK+       T   L  +D YL+YI ++ +    Y   +G   + P+
Sbjct: 557 PKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCLGISVWTPW 603


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +2

Query: 74  SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNPF 235
           +SL +  PK        T   L  +D YL+Y+ ++ +    Y   +G+  + P+
Sbjct: 641 ASLCSHQPKFLLSLVYLTDLVLFFLDTYLWYMLISTMFSIAYSFYMGSAIWTPW 694


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +2

Query: 35  IYYCKINKITXKMSSLTAVIPK----LYQEYTTK 124
           +YYC I  I   + ++T+++PK    L  E+ TK
Sbjct: 664 LYYCPIELIENLLRAITSLLPKNTSNLSDEFNTK 697


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 77  SLTAVIPK--LYQEYTTKTPKKLKIID 151
           +LT   PK  LY  Y++++PK  KI+D
Sbjct: 145 NLTVASPKSNLYYRYSSESPKYAKILD 171


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 158 LFYIFLTAVIQFGYCCLVGTFPFNPFLSGFISTVSC----FVLGVCL 286
           L  +F+  ++ +G C +  T PF      F  T S     F+LG C+
Sbjct: 448 LLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTCI 494


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 92  IPKLYQEYTTKT-PKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNPFLSGFISTVS 262
           IP   + +   T P+KLK+  + LF++    V+  G   ++ T   +  + G +  ++
Sbjct: 80  IPTFKETFAILTFPQKLKLTSSILFFLVAVGVLLSGDATILLTLSCSLIVEGVLIIIN 137


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 60   SQXKCLHLLL*FQNCIKNTQRKLLRSLK*LMHT 158
            S+ K +H+++   + IKNTQ KL  +L    H+
Sbjct: 986  SRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHS 1018


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 151  INYFKLLRSFRCVFLIQFWNYSSK*RHFXCDFIY 50
            ++ F++L+S +    +Q  +Y        CDF+Y
Sbjct: 1215 VSQFEMLKSKQIELTVQMASYEGDLNQNLCDFLY 1248


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 LVGTFPFNPFLSGFI 250
           L+ T P NPFLS F+
Sbjct: 31  LINTRPVNPFLSTFV 45


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 176 TAVIQFGYCCLVGTFPFNPFLSGFISTVSCFV 271
           TAV+ FGY  L+    F  FL G +     F+
Sbjct: 588 TAVLYFGYSLLISVLVF--FLCGSVGFFGAFL 617


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +2

Query: 41   YCKINKITXKMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTF 220
            YC  +K+T  +   T ++P   +     T KK  I + ++  IF  + +++ +  +   F
Sbjct: 1155 YCWKDKVTQMVFHCTTMMPTNIEHDPGCTLKKRHIGNDFVTIIFNESGLEYDFDTIPSQF 1214

Query: 221  PF 226
             F
Sbjct: 1215 NF 1216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,719
Number of Sequences: 5004
Number of extensions: 21942
Number of successful extensions: 82
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)