Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_C12
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0783 + 19607871-19607951,19608027-19608074,19608719-196088...    69   1e-12
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    29   0.77 
01_06_0073 + 26191822-26192116,26192227-26192445,26193655-261938...    27   2.3  
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851...    27   4.1  

>04_03_0783 +
           19607871-19607951,19608027-19608074,19608719-19608806,
           19608887-19608930,19609016-19609099
          Length = 114

 Score = 68.5 bits (160), Expect = 1e-12
 Identities = 36/80 (45%), Positives = 48/80 (60%)
 Frame = +2

Query: 74  SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNPFLSGFIS 253
           S    +I  L + Y   TP  LKIID Y+ +   TA+IQ  Y  +VG+FPFN FLSG +S
Sbjct: 6   SDAKLLIQSLGKAYAA-TPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLS 64

Query: 254 TVSCFVLGVCLRLQLIQKXK 313
            +   VL VCLR+Q+ +  K
Sbjct: 65  CIGTAVLAVCLRIQVNKDNK 84


>10_07_0176 - 13826764-13827064,13827271-13827377,13827474-13827836,
            13827912-13828079,13828153-13828374,13828784-13829023,
            13829640-13829719,13829853-13830018,13830720-13830783,
            13830861-13830962,13831085-13831227,13831370-13831474,
            13831551-13831706,13832125-13832241,13832315-13832392,
            13832466-13832550,13833334-13833455,13833546-13833611,
            13835190-13835284,13835427-13835523,13835873-13835983,
            13836083-13836164,13836292-13836353,13836620-13836685,
            13838002-13838232
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 74   SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVI 187
            +SL+   PKLYQE    T  K ++I  + F+ F  +++
Sbjct: 890  ASLSKKYPKLYQEGIRNTFFKWRVIAVWAFFAFYQSIV 927


>01_06_0073 +
           26191822-26192116,26192227-26192445,26193655-26193803,
           26193910-26194186,26194683-26194963
          Length = 406

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 235 LKWFYIYSKLLCPGSVSSAT 294
           +KWF    KLLCPG ++  T
Sbjct: 155 MKWFRDLLKLLCPGDLAGCT 174


>12_02_0992 +
           25083397-25083537,25084198-25084228,25084971-25085139,
           25085228-25085291,25085408-25085474,25086543-25086586,
           25086835-25086922,25087079-25087238,25087659-25087779,
           25087859-25087942,25088043-25088162,25088689-25088901,
           25088995-25089054,25089144-25089262,25089407-25089465,
           25089585-25089919
          Length = 624

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 300 INCSRRHTPRTKQLTVDIKPLKKGLNGKV 214
           +N S   TP  +QL +DI+   +GLN KV
Sbjct: 383 LNSSIMDTPECQQLYMDIQEFFEGLNMKV 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,947,935
Number of Sequences: 37544
Number of extensions: 114760
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)