Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_B22
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.17 |||transcriptional coactivator, multiprotein bridging ... 128 6e-31
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 33 0.030
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 29 0.37
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 27 2.0
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 26 3.5
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 25 6.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 8.1
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 8.1
>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 128 bits (309), Expect = 6e-31
Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Frame = +1
Query: 76 MSDWDTVTIL--RKKP-PKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTA 246
MSDWDTVT + R P + KT+ +N+ARR G V T++KY G Q ++
Sbjct: 1 MSDWDTVTKIGSRAGPGARTHVAKTQSQINSARRAGAIVGTEKKYATGNKSQDPAGQHLT 60
Query: 247 KLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNI 426
K+DRE E + + I +GRQAKG +QKDL+ +I EKPQ+VNDYE+GR IPN
Sbjct: 61 KIDRENEVKPPSTTGRSVAQAIQKGRQAKGWAQKDLSQRINEKPQVVNDYESGRAIPNQQ 120
Query: 427 VLGKIERAIGIKLRGK 474
VL K+ERA+GIKLRG+
Sbjct: 121 VLSKMERALGIKLRGQ 136
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 33.1 bits (72), Expect = 0.030
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 103 LRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTN-KQHVTTKNTAKLDRETEELRH 279
+ K K K +A N R+G+P +++ G N T+ NT D + +LR
Sbjct: 439 MSKSIKKPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSRDLRL 498
Query: 280 EKIPL 294
EKI L
Sbjct: 499 EKILL 503
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 29.5 bits (63), Expect = 0.37
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 79 SDWDTVTILR-KKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLD 255
++W + + + + ASA K A + QG+PVDTQ++ A V K D
Sbjct: 147 ANWSALAVAQFLRGEYASAYKIVDAFESTINQGVPVDTQEESEAMLFMNLVILKKDGVED 206
Query: 256 RETEELRHEKIPLD 297
L EK LD
Sbjct: 207 AYKHLLSIEKKVLD 220
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 482 ANHCSLLADRNNGIPWEAKTLLRFIY 559
AN CS+ A +N + W+ T RF Y
Sbjct: 57 ANFCSISATDDNALRWDKITYHRFAY 82
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 477 FFSTKFYSNCPFNFSKNNVIWNATTS 400
F T+ SNC F F + V WN+ S
Sbjct: 203 FIVTQSESNCKFRFDFSKVYWNSRLS 228
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 3.5
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 459 YSNCPFNFSKNNVIWNATTSFI 394
Y C F+FSK+ +W F+
Sbjct: 157 YQTCKFHFSKSQCVWTLYLEFL 178
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 28 NNTLDFVLSYQ*STLNMSDWDTVTILRKKPPKASALK-TEQAVNAARRQGIPVD 186
+N + +LSY N+ WD T L P A+A K + + ++A G P++
Sbjct: 535 DNRMLGLLSYLYFNCNLQRWDFTTSLTACQPIATAFKGSSKGIDAVNIIGEPLN 588
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 426 NVIWNATTSFIIIYNL 379
NV+W+ TTSFI I+ +
Sbjct: 357 NVLWSMTTSFINIWRI 372
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 229 TTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKD 351
T K+ K T + E D+GK+I G+ ++QK+
Sbjct: 281 TAKDPVKALTSTNNVEEEDPAEDIGKIIASGQTRAYLAQKE 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,280,789
Number of Sequences: 5004
Number of extensions: 43485
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -