Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_B19
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    26   3.1  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   5.5  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   5.5  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   9.5  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       25   9.5  

>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 455 VPIINEDCNNEELNLSIGNLVXTVYYDVE 541
           +P +     N ELNL I   + TVYY+ E
Sbjct: 324 LPAVKRVVENRELNLDIMPNIETVYYNNE 352


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 121 STKLSPASDANNKHWSWFSNRRDLFV 44
           S  LS  SD  N H  +F+N RDL++
Sbjct: 372 SEMLSAISDYANVHVEFFTNIRDLWI 397


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 228 FNLTADIFNIETLKNII*FCYYQNYHNYYRIL--RKRYPQNSVQLLTQITNIGVGFQIEE 55
           F LTA +  I+ L  +I FC + + +N  ++L  +       + L  + TN  V  +++E
Sbjct: 260 FFLTARLDKIQALTIMIQFCAHLSLYNLCKVLCGQMCLMVKDLDLHKEATNPNVDIEVDE 319

Query: 54  I 52
           +
Sbjct: 320 L 320


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 401 SNVEQPSTESPTREFEFEVPIINEDCNNEELNLSIGNLV 517
           S +EQPS  SPT     +   + ED +++ +    G L+
Sbjct: 362 SFIEQPSPISPTSTTSEDTNTLEEDTDDQSIKWIRGALI 400


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 192 LKNII*FCYYQNYHNYYRILRKRYPQNSVQLLTQITNIGVGFQIEEICLF 43
           + N    C ++N H  ++I  K   ++ V LL   TN+     +E +  F
Sbjct: 416 INNFTSTCAFENSHLNFQITPKSKTRDQVVLLATYTNLSPYDTVENLQSF 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,042
Number of Sequences: 5004
Number of extensions: 32688
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)