Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_B19
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013...    29   3.2  
07_01_0928 + 7795586-7795615,7795716-7795873,7796151-7796212,779...    28   4.2  
04_03_0911 + 20767041-20767047,20767119-20769322                       27   7.3  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    27   9.7  
03_06_0071 + 31465707-31466237,31467455-31468075,31468438-314685...    27   9.7  
01_06_0790 + 32019972-32020101,32020461-32020657,32020790-320209...    27   9.7  

>10_08_0392 +
           17500748-17500877,17501006-17501280,17501321-17501388,
           17501516-17501632,17501802-17501943,17502622-17502912,
           17503507-17503650
          Length = 388

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = -2

Query: 351 FILXKCNLSICKQFRCFLIFDKASVIHFSSANN*VSSAIRLFN--LTADIFNIETLKNII 178
           FI+  C++++C  F  FL+    S + +    +  +  I  F   L  D F    +  I+
Sbjct: 246 FIVLSCSIAVCVNFSTFLVIGTTSPVTYQVLGHLKTCLILSFGYVLLRDPFTFRNVAGIL 305

Query: 177 *FCYYQNYHNYYRILRKR 124
              +    ++++ +   R
Sbjct: 306 VAIFGMGLYSFFSVSESR 323


>07_01_0928 +
           7795586-7795615,7795716-7795873,7796151-7796212,
           7799021-7799081,7799767-7799911
          Length = 151

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 186 NII*FCYYQNYHNYYRILRK-RYPQNSVQLLTQITNIGV 73
           NII  C++Q  HN++R LR  R  +   +L T +  +G+
Sbjct: 42  NIINPCFFQLLHNHHRHLRHVRNHRGKEELKTNLARMGI 80


>04_03_0911 + 20767041-20767047,20767119-20769322
          Length = 736

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 129 KRYPQNSVQLLTQITNIGVGFQIEEICLFCMRYAICNA 16
           K YP  SVQL  +  +IG     +E    C+    C A
Sbjct: 300 KFYPMTSVQLPDKAQSIGAATSADECAAACLSSCSCTA 337


>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
            25898932-25901013,25901155-25901730,25904503-25905648,
            25907056-25908693
          Length = 2225

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -2

Query: 492  NSSLLQSSLMIGTSNSNSLVGLSVEGCSTLLSILLFCCADFLSF-----NCDFILXKCNL 328
            +S+L   +L I  S S+S +   ++GC  LL + +  C D ++      NC   L K  +
Sbjct: 1545 SSNLALIALKINDSGSSSDIVKFLQGCVNLLYLTIDSCIDLITLPEPIKNC-HCLRKLEI 1603

Query: 327  SICKQF 310
            + C  F
Sbjct: 1604 TNCWNF 1609


>03_06_0071 +
           31465707-31466237,31467455-31468075,31468438-31468520,
           31468895-31468979
          Length = 439

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 150 NYYRILRKRYPQNSVQLLTQITNIGVGFQIEEICLFC 40
           N   +L +R   ++V+LL++   + V  ++  +C+FC
Sbjct: 255 NESNVLGRRRSHDTVELLSEKCEVDVANRLISVCVFC 291


>01_06_0790 +
           32019972-32020101,32020461-32020657,32020790-32020993,
           32021444-32021645,32021798-32021886,32022567-32022662,
           32022710-32022814,32023516-32023556,32023685-32023777,
           32023853-32023970,32024488-32024578,32024693-32024766,
           32025008-32025187,32025643-32025681
          Length = 552

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 10  WHCIANCISHAKQTDL 57
           WHC+ +C+ H K+  L
Sbjct: 363 WHCLTHCMVHVKKVQL 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,147,959
Number of Sequences: 37544
Number of extensions: 168673
Number of successful extensions: 427
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)