Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_B19
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-4|CAB02854.1|  329|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC006827-3|AAF60882.1|  269|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z81050-4|CAB02854.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.5 protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
 Frame = -2

Query: 471 SLMIGTSNSNSLVGLSVEGCSTLLSILLFCCADF---LSFNCDFILXK-CNLSICKQFRC 304
           ++M+G  NS  +  +  E     L+ + FCC  +    S      L K   ++I +  RC
Sbjct: 253 AVMLGIPNSMFIYAVFFEARHEFLAKIAFCCLTYHGLASTIAMMTLTKPIKITILQMLRC 312

Query: 303 FLIFDKASVIHFSSAN 256
             + +  S + +SS N
Sbjct: 313 HALKNSVSTVQYSSQN 328


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 330 LSICKQFRCFLIFDKASVIHFSSANN*VSSAIRLFNLTADIFNIETLKNII*FC 169
           L IC+QF     F    + H+ SA    +S   L+N+      +    N+I FC
Sbjct: 177 LGICRQFTFPFPFGSVYIYHYQSAFGLKNSFFHLYNILF-WMTVSIGANVILFC 229


>AC006827-3|AAF60882.1|  269|Caenorhabditis elegans Hypothetical
           protein Y81B9A.2 protein.
          Length = 269

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 179 IIFFNVSMLKMSAVKLNKRIAEETQLLAE-EKWITDALSK 295
           IIFF++    +++ K+N  I ++ ++  E +KWI  ++ +
Sbjct: 206 IIFFSIYYYDLNSFKVNSEIEKQDKIFQEYKKWIFQSVQE 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,655,744
Number of Sequences: 27780
Number of extensions: 184870
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)