Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_B15
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   4.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   4.1  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   5.4  
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    25   7.1  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   9.4  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    25   9.4  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   9.4  

>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 266 FGESINKTVKKDKDADNLLDQYEDYEP 346
           FG S N T    KDA   LD Y++Y P
Sbjct: 379 FGNSYNVTRILTKDATFDLDAYQNYSP 405


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 463 LCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLV 353
           LC ++E   L   +SL +RAY    T P L   + L+
Sbjct: 414 LCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLI 450


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 183 SHSITVTLDFWNLALRSSDVLTRSMKEKQMKSWHTVT 73
           SH+  VT     LAL S DVL     +K ++ W  VT
Sbjct: 433 SHTAPVTA----LALSSDDVLITGADDKTVRQWDIVT 465


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 458 YRFRGSCTWLVCIPEIQSICSL-WDRACPRCTKP 360
           Y    + TW     ++  IC + +D  CP+CT P
Sbjct: 8   YHAIANWTWDTPKDDVCGICRVPFDGCCPQCTSP 41


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 501 FSTTRSRISSPNFCVPISRKLHL 433
           FST   R SSPN  +P SRK+ L
Sbjct: 204 FSTFFHRNSSPNRSLPRSRKIDL 226


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 293 KKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRD 397
           +KDKD+  L++  ED  PA+ Q VL  E+R    D
Sbjct: 113 EKDKDSAGLINDEEDKSPAK-QSVL--EERTSQED 144


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 610 GDITNRAVHDFYSSNLVKSEFFEHEVV*INRVAGIRVFDHEIKD 479
           G I N  + D+Y SN  K   F   ++ + +  GIR   +E  D
Sbjct: 519 GKIFNFIIPDYYKSNDFKKTDFRRCILFMLQRVGIRPKSYEFDD 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,622
Number of Sequences: 5004
Number of extensions: 52072
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)