Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_B15
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    28   6.6  
AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna pol...    28   6.6  
AF022974-5|AAC48036.3|  347|Caenorhabditis elegans Seven tm rece...    28   6.6  
AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymeras...    28   6.6  
Z66565-4|CAA91480.1|  384|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC084197-41|AAG23462.3|  493|Caenorhabditis elegans Ligand-gated...    27   8.7  

>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 562 PGCYCKNREQHDWLYRPQCFPWCP 633
           P CYC  RE+H  L + +C  W P
Sbjct: 153 PDCYCGKREKHCDLSKEKCH-WTP 175


>AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna
           polymerase eta) homologprotein 1 protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 535 LHVQKTRTSPGCYCKNREQHDWLY 606
           + +  TR  PG   +NR  H+WLY
Sbjct: 421 ISLSATRFQPGIPAQNRSIHEWLY 444


>AF022974-5|AAC48036.3|  347|Caenorhabditis elegans Seven tm
           receptor protein 208 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -3

Query: 502 VFDHEIKDIIAELLCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLVF 350
           +  +++  ++  L C  F    +  SV   YR +AVSG   +   + + +F
Sbjct: 83  LLSYDVLLLLVSLCCAFFGSLMVMFSVQFIYRFWAVSGNNSIKTFEGVRIF 133


>AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymerase
           eta protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 535 LHVQKTRTSPGCYCKNREQHDWLY 606
           + +  TR  PG   +NR  H+WLY
Sbjct: 421 ISLSATRFQPGIPAQNRSIHEWLY 444


>Z66565-4|CAA91480.1|  384|Caenorhabditis elegans Hypothetical
           protein T04F8.4 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 543 NMKSSRLIG*RGSAFSTTRSRISSPNFCVPISRKLHLACLY 421
           NM   R+I   G  FST       P F   + +  H+ C+Y
Sbjct: 93  NMDRQRMIAPEGMMFSTVLIISFHPLFLTRMDKAYHIRCMY 133


>AC084197-41|AAG23462.3|  493|Caenorhabditis elegans Ligand-gated
           ion channel protein 10 protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 500 FRPRDQGYHRRTFVYRFRGSCTWLVC--IPEIQSICSLWD 387
           +R R     R    YRF   C  L+   +PEIQSIC + +
Sbjct: 386 YRKRRSTVFRGVHNYRFNQECDDLMYSKVPEIQSICMMME 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,421,855
Number of Sequences: 27780
Number of extensions: 306942
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)