Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_B05
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 134 1e-32
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 134 1e-32
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 31 0.11
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.8
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 1.8
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 1.8
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 27 2.3
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.1
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 26 5.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.4
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 9.4
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 25 9.4
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 25 9.4
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 134 bits (324), Expect = 1e-32
Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 3/171 (1%)
Frame = +2
Query: 137 IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLH 316
IFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R H
Sbjct: 33 IFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAH 92
Query: 317 PFHVYPHQ*NVIMRWS**APDWDAWCVWQASGXL*HVFA-LDSPSCPCALVTGGRHRSSR 493
PFHV + N ++ + D + A G + A ++ ++ T R++
Sbjct: 93 PFHVV--RINKMLSCA--GADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATA 148
Query: 494 LCAVP--SSSSPERQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQY 640
+ A+ P +Q+I VSKKWGF++Y RDE+ + R G + DGC ++
Sbjct: 149 IEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
Score = 87.0 bits (206), Expect = 2e-18
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGCT*SQDPVSSIWVRRERPLTTFHCACTWCPTNMNS 218
M RRPARCYRYCKNKPYPKSR+ R S+ + + R+ + F C +++
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLG-RKRAGVDEFPL----CIHLVSN 55
Query: 219 *AQRLWRQDVSAAISTS*RTAERISSISA*DFTLSTF----IRINKMLSCAGADRLQTGM 386
+++ + + AA + + +I + + +RINKMLSCAGADRLQTGM
Sbjct: 56 EYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGM 115
Query: 387 RGAFGKPQG 413
R AFGKP G
Sbjct: 116 RHAFGKPNG 124
Score = 53.6 bits (123), Expect = 2e-08
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +1
Query: 418 VARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 561
VARV IGQ +MSVR+ D +A IEALRR ++KFPG + + K+ GF
Sbjct: 126 VARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 134 bits (324), Expect = 1e-32
Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 3/171 (1%)
Frame = +2
Query: 137 IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLH 316
IFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK GKD FH+R+R H
Sbjct: 33 IFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAH 92
Query: 317 PFHVYPHQ*NVIMRWS**APDWDAWCVWQASGXL*HVFA-LDSPSCPCALVTGGRHRSSR 493
PFHV + N ++ + D + A G + A ++ ++ T R++
Sbjct: 93 PFHVV--RINKMLSCA--GADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATA 148
Query: 494 LCAVP--SSSSPERQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQY 640
+ A+ P +Q+I VSKKWGF++Y RDE+ + R G + DGC ++
Sbjct: 149 IEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199
Score = 87.0 bits (206), Expect = 2e-18
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGCT*SQDPVSSIWVRRERPLTTFHCACTWCPTNMNS 218
M RRPARCYRYCKNKPYPKSR+ R S+ + + R+ + F C +++
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLG-RKRAGVDEFPL----CIHLVSN 55
Query: 219 *AQRLWRQDVSAAISTS*RTAERISSISA*DFTLSTF----IRINKMLSCAGADRLQTGM 386
+++ + + AA + + +I + + +RINKMLSCAGADRLQTGM
Sbjct: 56 EYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGM 115
Query: 387 RGAFGKPQG 413
R AFGKP G
Sbjct: 116 RHAFGKPNG 124
Score = 53.2 bits (122), Expect = 3e-08
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +1
Query: 418 VARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGF 561
VARV IGQ +MSVR+ D +A IEALRR ++KFPG + + K+ GF
Sbjct: 126 VARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 262 VPRKELRKGSVPYPHETSPFPRLSASIKCYHALELIGSRLGCVVRLASLR 411
+PRK L+ G +P P+ PRLSA K + +GS V+R+ +L+
Sbjct: 419 IPRK-LKSGFIP-PYAKRVVPRLSAKYKLVDETKDMGSGATAVIRIVTLK 466
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 616 SEAALFTQLLKLITFILCETPLL*YVDLLTF 524
S+A F ++L FI C +P+L Y+ + F
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIF 293
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 616 SEAALFTQLLKLITFILCETPLL*YVDLLTF 524
S+A F ++L FI C +P+L Y+ + F
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIF 293
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 616 SEAALFTQLLKLITFILCETPLL*YVDLLTF 524
S+A F ++L FI C +P+L Y+ + F
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIF 265
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 616 SEAALFTQLLKLITFILCETPLL*YVDLLTF 524
S+A F ++L FI C +P+L Y+ + F
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIF 293
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 241 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQ--IEDTGSWDQV 116
CL L L + H++ ++W+ +N R LL + E+TG D +
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETGEDDDL 983
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 156 RERPLTTFHCACTWCPTNMNS 218
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 152 KKRATVDDFPLCVHLVSDEYEQLSSEALEAG 244
+KRA +D LC+ +S + E ++ +LE+G
Sbjct: 64 EKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 346 ILLMRINVERVKSHADMELILSAVLYEVLIAADTSCL 236
++++ IN+ VK ++E LSAV VL+ +C+
Sbjct: 168 VVILAINLLHVKYFGEVEFWLSAVKILVLVTLIITCI 204
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 143 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 286
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 217 AELRGFGGRTYLLQ*VPRKELRKGSVPYPHETSPFP-RLSASIKCYHA 357
AE GGR + P +R+GSVP ++ P R S + C+++
Sbjct: 636 AENHASGGRLPKVPIPPLSNMRRGSVPIIPSSASLPMRTSGNRFCHYS 683
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -2
Query: 602 LHAASQTHHVHTL*NPTSLIRRSFDVPGNLN 510
+H + H +H+ + S +R FD P ++N
Sbjct: 374 IHDSGNFHPIHSSVDNNSFSQRDFDSPNSIN 404
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 513 QVPRNVKRSTYQRSGVSQSMNVMSLRSCVKR 605
+VP ++KR Y ++GVS+S + +KR
Sbjct: 89 KVPPHIKRPDYAKTGVSRSEQIEGRSFKLKR 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,529
Number of Sequences: 5004
Number of extensions: 61730
Number of successful extensions: 200
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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