Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_B05
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   111   4e-25
AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditi...    40   0.002
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   6.6  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  111 bits (267), Expect = 4e-25
 Identities = 48/64 (75%), Positives = 54/64 (84%)
 Frame = +2

Query: 137 IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLH 316
           IFDLG KRA VD FP CVH++S+E E LSSEALEA RIC NKY+VKNCGKD FH+R+R H
Sbjct: 33  IFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKH 92

Query: 317 PFHV 328
           PFHV
Sbjct: 93  PFHV 96



 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 60/131 (45%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
 Frame = +3

Query: 39  MGRRPARCYRYCKNKPYPKSRFCRGCT*SQDPVSSIWVRRERPLTTFHCACTWCPTNMNS 218
           MGRRPARCYRY KNKPYPKSRFCRG   ++  +  +  +R   + TF      C   M++
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRAN-VDTFPA----CVHMMSN 55

Query: 219 *AQRLWRQDVSAAISTS*RTAERISSISA*DFTLST------FIRINKMLSCAGADRLQT 380
             + L  + + AA   +      + +     F L          RINKMLSCAGADRLQT
Sbjct: 56  EREHLSSEALEAARICA--NKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQT 113

Query: 381 GMRGAFGKPQG 413
           GMRGA+GKPQG
Sbjct: 114 GMRGAYGKPQG 124



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/39 (56%), Positives = 31/39 (79%)
 Frame = +2

Query: 521 PERQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQ 637
           P RQ I  S+KWGFTK++R+++E++R EGRL +DG  VQ
Sbjct: 160 PGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQ 198



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 23/50 (46%), Positives = 29/50 (58%)
 Frame = +1

Query: 418 VARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSKDLRIKEVGFHK 567
           VARV IG  + S+R  +      IEA RRAKFKFPG    +  ++ GF K
Sbjct: 126 VARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTK 175


>AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditis
           gtp-binding proteinprotein 1 protein.
          Length = 613

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
 Frame = +1

Query: 244 TYLLQ*VPRKELRKGSVPYPHETSPFPRL--SASIKCYHALELIGSRLGCVVRLASLRXT 417
           ++ L+ +P+K++RKG V    +  P   +   A I   H    I      ++ + S+R T
Sbjct: 440 SFALKKIPKKDVRKGMVLVDPKVKPVASMVFEAEILVLHHPTTIKPNYQAMLHIGSVRQT 499

Query: 418 VARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTS---KDLRIKEVG 558
              V +G+ ++  R+ DR K Q  + +R+ ++  PGT    ++ R K VG
Sbjct: 500 ATLVSMGKEVL--RTGDRDKVQ-FKFIRQPEYIRPGTKMVFREGRTKAVG 546


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = -2

Query: 332 DKRGKGEVSCGY----GTDPFRSSLRGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQR 165
           D  GK    C Y     T P  S+++ T  +   +   P +    ++ TP+  T  +  +
Sbjct: 134 DDNGKNYFVCSYDSRWATKPTPSTMKSTPTTPTTIKSTPTTPTT-MKSTPTTPTTPTTMK 192

Query: 164 SLSSYPNRRYXILGSGTSPTEP 99
           S  + P     +  + T+PT P
Sbjct: 193 STPTTPTTPTTMKSTPTTPTTP 214


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 406 GLPNAPRIPVWSLSAPA 356
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 560 FTKYERDEFEKLREEGRLANDGCIVQYR 643
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,419,587
Number of Sequences: 27780
Number of extensions: 367306
Number of successful extensions: 1034
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)