Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP11_F_B04
(510 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic ri... 81 3e-15
CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein. 81 3e-15
BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, larg... 81 3e-15
BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, larg... 81 3e-15
AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1 pr... 81 3e-15
CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein. 79 1e-14
AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal phosph... 78 2e-14
>M17886-1|AAA36471.1| 114|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P1 mRNA, complete cds. ).
Length = 114
Score = 80.6 bits (190), Expect = 3e-15
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 308
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>CR450339-1|CAG29335.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 80.6 bits (190), Expect = 3e-15
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 308
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>BC007590-1|AAH07590.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 80.6 bits (190), Expect = 3e-15
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 308
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>BC003369-1|AAH03369.1| 114|Homo sapiens ribosomal protein, large,
P1 protein.
Length = 114
Score = 80.6 bits (190), Expect = 3e-15
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 308
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>AB061836-1|BAB79474.1| 114|Homo sapiens ribosomal protein P1
protein.
Length = 114
Score = 80.6 bits (190), Expect = 3e-15
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 308
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>CR542209-1|CAG47005.1| 114|Homo sapiens RPLP1 protein.
Length = 114
Score = 78.6 bits (185), Expect = 1e-14
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 308
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI ++G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICDVGAGGPAPAAGAAPA 77
Query: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
SDDDMGFGLFD
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114
>AY303789-1|AAP68820.1| 113|Homo sapiens acidic ribosomal
phosphoprotein P1 protein.
Length = 113
Score = 78.2 bits (184), Expect = 2e-14
Identities = 39/96 (40%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = +3
Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXX 308
DD+V VT +KI+ ++KAA V+VEP+WPGLFAKAL +N+ LI N+G+G
Sbjct: 18 DDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPA 77
Query: 309 XXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLF 416
SDDDMGFGLF
Sbjct: 78 GGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLF 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,050,163
Number of Sequences: 237096
Number of extensions: 1001242
Number of successful extensions: 1381
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -