Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_B04
         (510 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...   109   2e-24
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...   109   2e-24
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...   109   2e-24
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...   107   9e-24
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ...    29   2.8  
U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl...    28   8.4  

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score =  109 bits (263), Expect = 2e-24
 Identities = 57/95 (60%), Positives = 60/95 (63%)
 Frame = +3

Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 314
           DDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLITNIGSGV          
Sbjct: 18  DDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAP 77

Query: 315 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
                                   SDDDMGFGLFD
Sbjct: 78  AAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 83  MVSKAELACVYSALIL 130
           M +KAELACVY++LIL
Sbjct: 1   MSTKAELACVYASLIL 16


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score =  109 bits (263), Expect = 2e-24
 Identities = 57/95 (60%), Positives = 60/95 (63%)
 Frame = +3

Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 314
           DDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLITNIGSGV          
Sbjct: 18  DDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAP 77

Query: 315 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
                                   SDDDMGFGLFD
Sbjct: 78  AAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 83  MVSKAELACVYSALIL 130
           M +KAELACVY++LIL
Sbjct: 1   MSTKAELACVYASLIL 16


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score =  109 bits (263), Expect = 2e-24
 Identities = 57/95 (60%), Positives = 60/95 (63%)
 Frame = +3

Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 314
           DDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALEGINV+DLITNIGSGV          
Sbjct: 18  DDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAP 77

Query: 315 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
                                   SDDDMGFGLFD
Sbjct: 78  AAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 83  MVSKAELACVYSALIL 130
           M +KAELACVY++LIL
Sbjct: 1   MSTKAELACVYASLIL 16


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score =  107 bits (257), Expect = 9e-24
 Identities = 56/95 (58%), Positives = 59/95 (62%)
 Frame = +3

Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 314
           DDDVAVTGEKI+TILKAA V+VEPYWPGLFAKALE INV+DLITNIGSGV          
Sbjct: 18  DDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAINVKDLITNIGSGVGAAPAGGAAP 77

Query: 315 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
                                   SDDDMGFGLFD
Sbjct: 78  AAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112


>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
           protein.
          Length = 1047

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 265 VIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEI-FSPVTATSSSXQDESRVN 110
           +I S+ L+P+K   N P QY  T+   A K  +I FS  +  S     +S  N
Sbjct: 255 LIASQNLVPAKTHINSPTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKN 307


>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
           single-stranded nucleicacid binding protein protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 256 SRTLMPSKALANRPGQYGSTSTAAAFKMVEI-FSPVTATSSSXQDESRVN 110
           S+ L+P+K   N P QY  T+   A K  +I FS  +  S     +S  N
Sbjct: 258 SQNLVPAKTHINTPTQYNDTNATNALKTAKINFSSHSHQSEIKPTQSAKN 307


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,834,108
Number of Sequences: 53049
Number of extensions: 311545
Number of successful extensions: 807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1846255872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)