Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_B04
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    90   7e-19
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    87   9e-18
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   2.6  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 46/95 (48%), Positives = 57/95 (60%)
 Frame = +3

Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 314
           DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LIT++ SG           
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAA 76

Query: 315 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
                                   SDDDMGFGLFD
Sbjct: 77  AAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 83  MVSKAELACVYSALIL 130
           M S  ELACVY+ALIL
Sbjct: 1   MASNQELACVYAALIL 16


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 86.6 bits (205), Expect = 9e-18
 Identities = 45/95 (47%), Positives = 56/95 (58%)
 Frame = +3

Query: 135 DDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXX 314
           DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LIT++ SG           
Sbjct: 18  DDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLITSVSSGA-GSGPAPAAA 76

Query: 315 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 419
                                   SDDDMGFGLFD
Sbjct: 77  AAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 83  MVSKAELACVYSALIL 130
           M S  ELACVY+ALIL
Sbjct: 1   MASNQELACVYAALIL 16


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 387 SDDDMGFGLFD 419
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 387 SDDDMGFGLFD 419
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 387 SDDDMGFGLFD 419
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
           protein F44E2.4 protein.
          Length = 1283

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 1   CSLFVRTQTCLFSLELRPTATCTFKTKNGVKS*ISMCLLCS 123
           CSLF R + CL +   + +  C+F +     + I +  +CS
Sbjct: 467 CSLFARYEQCLSATVFKNSQRCSFASPLNSLARIGLAPICS 507


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,040,962
Number of Sequences: 27780
Number of extensions: 152915
Number of successful extensions: 358
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)