Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_B02
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548...    29   3.4  
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475...    28   6.0  
02_02_0252 + 8323087-8323523,8323929-8324019,8324155-8324281,832...    28   6.0  
04_04_0836 + 28546414-28547001                                         27   8.0  

>11_01_0671 -
           5479240-5479286,5480399-5480588,5480669-5480824,
           5481005-5481931
          Length = 439

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 473 ETRATHTXTPALVSLRLXSCWKR 541
           E   TH   P L++LRL  CW R
Sbjct: 212 EHHRTHIYAPNLITLRLDDCWGR 234


>06_03_1282 -
           28946363-28946533,28947234-28947272,28947399-28947566,
           28947605-28947697,28948135-28948215,28948409-28948499,
           28948657-28948728,28948803-28948903,28949283-28949381,
           28949631-28949954
          Length = 412

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 2   SCCAQTPVQPARAASCDEVAAR 67
           SC ++ P +PAR  + DE+AAR
Sbjct: 47  SCSSRPPPEPARVYTDDEIAAR 68


>02_02_0252 +
           8323087-8323523,8323929-8324019,8324155-8324281,
           8324469-8324623
          Length = 269

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 312 RSTGERDVADVGRMGSRHRLVDDEGAARR 226
           ++TG  D+A    M ++H L+  EGAA R
Sbjct: 241 KATGGADIATAASMQAKHELLACEGAAMR 269


>04_04_0836 + 28546414-28547001
          Length = 195

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 333 VLKTAKARSTGERDVADVGRMGSRHRLVDDEGAA-RRAPASCRLHLPKLLEGFHYV 169
           VL TAK      R  ADV        + DDE A    +PA  +L +  L EG  +V
Sbjct: 112 VLLTAKPEGDFPRRQADVVAHLPAQTMADDEEATTESSPAKAKLPMGSLYEGAMFV 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,898
Number of Sequences: 37544
Number of extensions: 247337
Number of successful extensions: 837
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)