Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_A24
         (604 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022326-1|AAH22326.2|   59|Homo sapiens small EDRK-rich factor ...    43   7e-04
BC015491-1|AAH15491.2|   59|Homo sapiens small EDRK-rich factor ...    43   7e-04
AF073298-1|AAC63516.1|   59|Homo sapiens small EDRK-rich factor ...    43   7e-04
BC021174-1|AAH21174.1|   62|Homo sapiens small EDRK-rich factor ...    40   0.009
AF073518-1|AAC63517.1|   62|Homo sapiens small EDRK-rich factor ...    40   0.009
BC104738-1|AAI04739.1|  110|Homo sapiens small EDRK-rich factor ...    35   0.25 
BC103687-1|AAI03688.1|  110|Homo sapiens small EDRK-rich factor ...    35   0.25 
BC101970-1|AAI01971.1|  110|Homo sapiens SERF1B protein protein.       35   0.25 
BC093882-1|AAH93882.1|  110|Homo sapiens small EDRK-rich factor ...    35   0.25 
BC093880-1|AAH93880.1|  110|Homo sapiens small EDRK-rich factor ...    35   0.25 
BC035932-1|AAH35932.1|  110|Homo sapiens small EDRK-rich factor ...    35   0.25 
AF073519-1|AAC63518.1|  110|Homo sapiens small EDRK-rich factor ...    35   0.25 

>BC022326-1|AAH22326.2|   59|Homo sapiens small EDRK-rich factor 2
           protein.
          Length = 59

 Score = 43.2 bits (97), Expect = 7e-04
 Identities = 23/43 (53%), Positives = 27/43 (62%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 354
           MTRGNQ +LAR KN KKQ +  K K   +  GLS   RK RD+
Sbjct: 1   MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRDS 41


>BC015491-1|AAH15491.2|   59|Homo sapiens small EDRK-rich factor 2
           protein.
          Length = 59

 Score = 43.2 bits (97), Expect = 7e-04
 Identities = 23/43 (53%), Positives = 27/43 (62%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 354
           MTRGNQ +LAR KN KKQ +  K K   +  GLS   RK RD+
Sbjct: 1   MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRDS 41


>AF073298-1|AAC63516.1|   59|Homo sapiens small EDRK-rich factor 2
           protein.
          Length = 59

 Score = 43.2 bits (97), Expect = 7e-04
 Identities = 23/43 (53%), Positives = 27/43 (62%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 354
           MTRGNQ +LAR KN KKQ +  K K   +  GLS   RK RD+
Sbjct: 1   MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRDS 41


>BC021174-1|AAH21174.1|   62|Homo sapiens small EDRK-rich factor 1A
           (telomeric) protein.
          Length = 62

 Score = 39.5 bits (88), Expect = 0.009
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 354
           M RGNQ +LAR KN KK  E+ K K   ++  L+  +RK RD+
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRKQRDS 41


>AF073518-1|AAC63517.1|   62|Homo sapiens small EDRK-rich factor 1,
           short isoform protein.
          Length = 62

 Score = 39.5 bits (88), Expect = 0.009
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRDA 354
           M RGNQ +LAR KN KK  E+ K K   ++  L+  +RK RD+
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRKQRDS 41


>BC104738-1|AAI04739.1|  110|Homo sapiens small EDRK-rich factor 1B
           (centromeric) protein.
          Length = 110

 Score = 34.7 bits (76), Expect = 0.25
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 342
           M RGNQ +LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>BC103687-1|AAI03688.1|  110|Homo sapiens small EDRK-rich factor 1B
           (centromeric) protein.
          Length = 110

 Score = 34.7 bits (76), Expect = 0.25
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 342
           M RGNQ +LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>BC101970-1|AAI01971.1|  110|Homo sapiens SERF1B protein protein.
          Length = 110

 Score = 34.7 bits (76), Expect = 0.25
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 342
           M RGNQ +LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>BC093882-1|AAH93882.1|  110|Homo sapiens small EDRK-rich factor 1A,
           telomeric protein.
          Length = 110

 Score = 34.7 bits (76), Expect = 0.25
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 342
           M RGNQ +LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>BC093880-1|AAH93880.1|  110|Homo sapiens small EDRK-rich factor 1A
           (telomeric) protein.
          Length = 110

 Score = 34.7 bits (76), Expect = 0.25
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 342
           M RGNQ +LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>BC035932-1|AAH35932.1|  110|Homo sapiens small EDRK-rich factor 1A
           (telomeric) protein.
          Length = 110

 Score = 34.7 bits (76), Expect = 0.25
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 342
           M RGNQ +LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


>AF073519-1|AAC63518.1|  110|Homo sapiens small EDRK-rich factor 1,
           long isoform protein.
          Length = 110

 Score = 34.7 bits (76), Expect = 0.25
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 226 MTRGNQXDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 342
           M RGNQ +LAR KN KK  E+ K K   ++  L+  +RK
Sbjct: 1   MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,345,502
Number of Sequences: 237096
Number of extensions: 1075930
Number of successful extensions: 1897
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1892
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)