Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP11_F_A02
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...    29   0.48 
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    27   1.9  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   3.4  
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.4  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   5.9  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   7.9  

>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 436 MSYMLXHLHNGWQV 477
           MSY L HLH+GW V
Sbjct: 1   MSYFLPHLHSGWHV 14


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 320 QILILFCSLKFAFHI*DIPKLFYSHILFLVTVHVFY 213
           Q+++L C L +  +  DIP+ F  H+   +T  + Y
Sbjct: 203 QVILLECKLFYDLNCQDIPEFFEDHMSEFMTAFLNY 238


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 312 DIILLTEICLSHLRHSKVI 256
           DI+LL+++  +H  HSK+I
Sbjct: 157 DILLLSDLVFNHTEHSKLI 175


>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 322 SVVLQHDYILLIAIAISRKKNTEIIVCLK*YIK 420
           + + Q  Y+L I I +++   TE++  LK Y++
Sbjct: 56  NTIFQFSYLLYIYIDLTKADQTEVLQFLKTYVE 88


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 279 HLRHSKVILFSHFVSRHCSR 220
           HLR +K I+ ++FV + CSR
Sbjct: 217 HLRSNKSIVVNNFVGQLCSR 236


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 447 HITHFANKLLYVLFQTNDYFCILFSGNCYCYEQN 346
           +I+HFA  LLY L   +D + I  +    CY +N
Sbjct: 606 NISHFAQSLLYTLL-ISDRYGINTNQALLCYLEN 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,303
Number of Sequences: 5004
Number of extensions: 36610
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)