Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_P16
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual 87 2e-18
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 30 0.25
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 1.3
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 27 2.3
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 27 3.1
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 27 3.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 4.1
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 5.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 7.2
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 7.2
>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 97
Score = 87.0 bits (206), Expect = 2e-18
Identities = 43/94 (45%), Positives = 65/94 (69%)
Frame = +1
Query: 244 YVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYF 423
YV+L+S DG FI+++E A +SGTI+A+L+ G F+E + NE F +I + +L+KVC Y
Sbjct: 5 YVRLISGDGFVFILEKEIACLSGTIRAILN-EGIFSEAQKNECTFPDIRATLLEKVCEYL 63
Query: 424 TYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 525
Y RY N +IP+F I PE+ LE+L+ A +L+
Sbjct: 64 HYNYRYKN-QLDIPKFDIPPEMVLELLVTAEYLE 96
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 30.3 bits (65), Expect = 0.25
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +1
Query: 247 VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYFT 426
+KL+SSD EF+V + A S IK ML G+ + + S+VL+KV +
Sbjct: 4 IKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINV----PIPLPNVSSNVLRKVLEWCE 59
Query: 427 YKVRYTNSSTE 459
+ S TE
Sbjct: 60 HHKNDLYSGTE 70
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/92 (25%), Positives = 41/92 (44%)
Frame = -3
Query: 503 NTSRAISGAIGNSGISVDELV*RTLYVKYMQTFWSTCDGISLKLTSLASFSANWPGPLSI 324
+ + ++G+ NS ++ V T V Y T +T S LTS+ + S + GP ++
Sbjct: 681 SVTTTLTGSGSNSIVTETVDVPTTTSVNYGYTTITTGWTGSTTLTSIVTHSGSETGPTTV 740
Query: 323 ALIVPDIRACSLFTMNSCPSEDTSFTYIASGP 228
+ P + A + T T+ +SGP
Sbjct: 741 YIETPSVSATTTTTTIGYSGSLTTTLTGSSGP 772
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 397 VLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAAN 516
++ K CM ++RY S T I P PE VLM+ N
Sbjct: 184 IVHKDCMRILREIRYDLSFTRISSSPYLPE--THVLMSEN 221
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 525 VEEVGSHQHFEGDLGSDRKLWYLCRRVGIAYLV 427
+E+ G+H ++ DLG L + CRR + LV
Sbjct: 669 IEQQGNHPLYDMDLGIRLCLQFNCRRSAVKILV 701
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 322 AMLSGPGQFAENEANEVNFREIPSHVLQKVC--MYFTYKVRYTNSS 453
A+LSGP + NE E+ + ++P + + T KVRY S
Sbjct: 121 ALLSGPEELPRNEKGELIYEDVPIEETWQAMEELLETGKVRYIGIS 166
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 263 EDTSFTYIASGPSHPPYTFSSPPILPDPLA 174
+ T+ T A+ +P F PP++P P A
Sbjct: 347 QTTTTTTEAAAAQYPQAAFPPPPVMPQPAA 376
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 364 NEVNFREIPSHVLQKVCMYFTYKVRYTN--SSTEIPEFPIAPEIALE 498
+ V+ EIPS+V+ VC +V N SSTEI + E+ E
Sbjct: 414 SNVDSDEIPSNVMLSVCTNLINEVASQNKYSSTEISQITTNREVEEE 460
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 280 IVKREHALISGTIKAMLSGPGQFAENEANEV 372
++ ++ LISGT+++ L ++ + E NE+
Sbjct: 1259 LIPQDPVLISGTVRSNLDPFEEYGDGELNEI 1289
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 534 RLTVEEVGSHQHFEGDLGSDRKLWYL 457
RLTV+E+ H F G + D LW L
Sbjct: 354 RLTVDEIHQHPFFNG-IKFDNTLWEL 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,537
Number of Sequences: 5004
Number of extensions: 51243
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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