Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_P10
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25599-6|AAA28051.1| 213|Caenorhabditis elegans Hypothetical pr... 156 1e-38
Z95559-20|CAB63360.2| 263|Caenorhabditis elegans Hypothetical p... 107 7e-24
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 31 0.54
U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,... 29 3.8
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 29 3.8
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 29 3.8
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 29 3.8
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 29 3.8
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 29 3.8
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 29 3.8
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p... 28 5.0
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 27 8.7
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 27 8.7
>L25599-6|AAA28051.1| 213|Caenorhabditis elegans Hypothetical
protein F54H12.6 protein.
Length = 213
Score = 156 bits (378), Expect = 1e-38
Identities = 83/182 (45%), Positives = 108/182 (59%), Gaps = 3/182 (1%)
Frame = +1
Query: 97 PRXLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTPAER 273
P L N LAE+++ +G+ S D Q+F +G AP A+ P+V RWY +ASYT AER
Sbjct: 8 PAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVASYTDAER 67
Query: 274 KTWSQ--GTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYAD 447
KTW+ G++P DLFGS L AYA+
Sbjct: 68 KTWASAGGSAPAAAAADGDDF------------DLFGSDDEEEDAEKAKIVEERLAAYAE 115
Query: 448 KKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQ 627
KK+KK IAKSS++LDVKPWDDETD+ EME VR+IEM+GL+WG +KL+P+GYGI KLQ
Sbjct: 116 KKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQ 175
Query: 628 FV 633
+
Sbjct: 176 II 177
>Z95559-20|CAB63360.2| 263|Caenorhabditis elegans Hypothetical
protein Y41E3.10a protein.
Length = 263
Score = 107 bits (257), Expect = 7e-24
Identities = 50/89 (56%), Positives = 61/89 (68%)
Frame = +1
Query: 367 DLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQ 546
DLFGS L AYA KK+ K IAKSS++LDVKPWDDETD+ EME
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198
Query: 547 VRTIEMEGLLWGASKLVPVGYGINKLQFV 633
VR+IEM+GL+WG +KL+P+GYGI KLQ +
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGIKKLQII 227
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 268 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 131
QP CM + + VV+ PAP Q + Q +++C+QT+ Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171
>U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,
short chain protein27 protein.
Length = 816
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 484 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 609
SI+L VKP DDE ++++ NQ M G LW A++ Y
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSY 471
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 GMMKPI*RKWKTKYALLKWKAFSGEPPNLCLLGMA*IN-CNLCVI 640
G ++ + ++WKT Y L K +G P + L IN C++CVI
Sbjct: 832 GDLEYLRKEWKTLYNLPKISILNGSPLSRADLRAVNINLCDMCVI 876
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 GMMKPI*RKWKTKYALLKWKAFSGEPPNLCLLGMA*IN-CNLCVI 640
G ++ + ++WKT Y L K +G P + L IN C++CVI
Sbjct: 819 GDLEYLRKEWKTLYNLPKISILNGSPLSRADLRAVNINLCDMCVI 863
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 GMMKPI*RKWKTKYALLKWKAFSGEPPNLCLLGMA*IN-CNLCVI 640
G ++ + ++WKT Y L K +G P + L IN C++CVI
Sbjct: 841 GDLEYLRKEWKTLYNLPKISILNGSPLSRADLRAVNINLCDMCVI 885
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1c protein.
Length = 1131
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 GMMKPI*RKWKTKYALLKWKAFSGEPPNLCLLGMA*IN-CNLCVI 640
G ++ + ++WKT Y L K +G P + L IN C++CVI
Sbjct: 832 GDLEYLRKEWKTLYNLPKISILNGSPLSRADLRAVNINLCDMCVI 876
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1b protein.
Length = 1118
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 GMMKPI*RKWKTKYALLKWKAFSGEPPNLCLLGMA*IN-CNLCVI 640
G ++ + ++WKT Y L K +G P + L IN C++CVI
Sbjct: 819 GDLEYLRKEWKTLYNLPKISILNGSPLSRADLRAVNINLCDMCVI 863
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1a protein.
Length = 1140
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 GMMKPI*RKWKTKYALLKWKAFSGEPPNLCLLGMA*IN-CNLCVI 640
G ++ + ++WKT Y L K +G P + L IN C++CVI
Sbjct: 841 GDLEYLRKEWKTLYNLPKISILNGSPLSRADLRAVNINLCDMCVI 885
>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical protein
M01F1.7 protein.
Length = 1034
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 112 DLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKT 279
D+ +Y E+ Y+ Y ++ D+Q N PH L ++N S P ++K+
Sbjct: 875 DVVRYWQEQGYLIIYLTARPDMQQRVVSAWLAQHNFPHALLFFNNSFSTEPLKQKS 930
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 268 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 131
QP CM + + VV+ PA Q + Q +++C+QT+ Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAAVQCVPQCQQQCQQQCVQTQPIQQ 171
>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
protein M01F1.7 protein.
Length = 1034
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 112 DLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKT 279
D+ +Y E+ Y+ Y ++ D+Q N PH L ++N S P ++K+
Sbjct: 875 DVVRYWQEQGYLIIYLTARPDMQQRVVSAWLAQHNFPHALLFFNNSFSTEPLKQKS 930
>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 223 HVLRWYNQIASYTPAERKTWSQGTSP 300
H+L +Q+ S TPA W+QG SP
Sbjct: 1524 HLLDLCSQLHSQTPAIFAKWAQGASP 1549
>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 223 HVLRWYNQIASYTPAERKTWSQGTSP 300
H+L +Q+ S TPA W+QG SP
Sbjct: 1524 HLLDLCSQLHSQTPAIFAKWAQGASP 1549
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.131 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,164
Number of Sequences: 27780
Number of extensions: 270220
Number of successful extensions: 759
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -