Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_P01
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.69 
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   2.1  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   6.4  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   6.4  
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    25   8.5  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   8.5  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.5  

>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 521 VLRFSVFCWKHSGPPSAMNKAIRSPFLVAHK 429
           ++R S++   HS  PS++++ +  PFL  HK
Sbjct: 333 LVRHSIYVSIHSREPSSLSRKLAPPFLRTHK 363


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 264 LASSISVFRTFKSTSPLRQFPKVRNAASTCRDFVFSI 154
           L  S  VFR F+S++P   FP V  A    R F  S+
Sbjct: 9   LQLSWQVFRRFQSSNPQLSFPCVDQAQERSRQFEQSL 45


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 23  EVEQVSLLTTDVEDCLDNDF 82
           E+E  SLL TD+ D L N F
Sbjct: 336 EIEDASLLKTDISDELKNTF 355


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 577 SSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 473
           SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 379 SSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 39  PCLQLMWKTVLITIFAAGVLA 101
           PC++L+  + L+T++ AG+L+
Sbjct: 301 PCIRLLSISCLVTLYKAGILS 321


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 587 QARLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSG 483
           QA+L++  ++T+  +    KK  LRF   C+ H G
Sbjct: 56  QAKLEITKEATLNPIKQDTKKGKLRFVRNCFPHHG 90


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 590 FQARLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 447
           F +RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 287 FNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 372 NDYANHINDAQNSTNQLIDFVCYKE 446
           N Y  HI  +  +  +L  F CYKE
Sbjct: 74  NIYVKHIKSSNEAKTELEIFNCYKE 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,164
Number of Sequences: 5004
Number of extensions: 44969
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)