Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_O18
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   161   7e-41
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   160   1e-40
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   2.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.9  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  161 bits (391), Expect = 7e-41
 Identities = 78/128 (60%), Positives = 95/128 (74%)
 Frame = +1

Query: 220 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 399
           W GS+K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 400 EKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSXSAALIQQSTTVKNKDIRKFLDGL 579
           E+  R +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+NKDIRKFLDG+
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGI 177

Query: 580 YVSXKTTV 603
           YVS +  +
Sbjct: 178 YVSERGNI 185



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 20/40 (50%), Positives = 32/40 (80%)
 Frame = +2

Query: 50  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHL 169
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + +
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRV 42


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  160 bits (389), Expect = 1e-40
 Identities = 77/128 (60%), Positives = 96/128 (75%)
 Frame = +1

Query: 220 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 399
           W GS+K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 400 EKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSXSAALIQQSTTVKNKDIRKFLDGL 579
           E+  R +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+NKDIRKFLDG+
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGI 177

Query: 580 YVSXKTTV 603
           YVS +  +
Sbjct: 178 YVSERGNI 185



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 19/40 (47%), Positives = 29/40 (72%)
 Frame = +2

Query: 50  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHL 169
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHV 42


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 493 LEDVSXSAALIQQSTTVKNKDIRKFLDGLYVSXKTTVVLDDI 618
           + D+S SA    + T + N+++ K  +GL+++ +T+  LD I
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS-FLDGI 118


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 448 NSPKQKDELIIEGNSLEDVSXSAALIQQS 534
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,025
Number of Sequences: 5004
Number of extensions: 49245
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)