Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_O12
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   3.3  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   5.7  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   7.5  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    25   10.0 

>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 255 ACPF*SRHTITRRTSLHIANFHRNSISIPIATR*ANHESSLRRTTIPN-ELQTLITQQ 85
           AC   ++ T  R +   ++N H +++S P+A       S + + +IPN EL   + QQ
Sbjct: 289 ACSMLTKTTPHRASVDILSNLHESTVSPPMADESVQRSSEVSK-SIPNVELSLNVNQQ 345


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 344 VDMCHLIAMITCVLVMLEMN 403
           VD+C ++ ++TC+L  L +N
Sbjct: 262 VDLCKILIILTCMLEELSLN 281


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 238 RSKRTRSSIGRYDDSSD 288
           RS RTRS+ GRY D+ D
Sbjct: 63  RSGRTRSNPGRYVDTDD 79


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 142 FMIGLPRSDRDRDRITVKIRNMKRSSSRDSMPRSKRTR 255
           F   L + + +RDR+  K+R ++  S+     R  R R
Sbjct: 105 FYDSLEKKENERDRLQEKLRALQEESANLRRQRENRLR 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,983
Number of Sequences: 5004
Number of extensions: 32640
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)