Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_O09
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 49 2e-07
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 48 4e-07
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 27 0.58
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 25 3.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 4.1
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 24 5.4
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 5.4
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 24 7.1
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 23 9.4
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 23 9.4
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 23 9.4
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 49.2 bits (112), Expect = 2e-07
Identities = 24/32 (75%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
Frame = +2
Query: 89 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDP 181
K+GINGFGRIGR+VLR A + K QVVAINDP
Sbjct: 5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDP 36
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 48.0 bits (109), Expect = 4e-07
Identities = 23/32 (71%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
Frame = +2
Query: 89 KIGINGFGRIGRLVLRASIEKG-AQVVAINDP 181
K+GINGFGRIGR+VLR +I G QVVA+NDP
Sbjct: 5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDP 36
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 178 PFIGLDYMVNLSKY 219
PFI LDYM + KY
Sbjct: 36 PFIDLDYMAYMFKY 49
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 27.5 bits (58), Expect = 0.58
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 147 SIEARSTKRPMRPNPLIPIFDMLSASYRKFVE*LTTTTYAQVQDG 13
++ A+ TK P+RP + P + SA + ++ + T AQVQ+G
Sbjct: 179 ALAAKLTK-PIRPLWVTPASRLTSAQFEEYFTVVLVTASAQVQNG 222
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 25.0 bits (52), Expect = 3.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 89 KIGINGFGRIGRLVLRASIEKGAQVVAINDPSSVLTIWLTF 211
++GI GFG +GRL + G +V + P + +I T+
Sbjct: 6 QVGIIGFGDMGRLYAEYISKAGWRVNVCDRPENYESIQATY 46
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 4.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 152 GAQVVAINDPSSVLTIWLTFP 214
GA INDPSS +T+ +P
Sbjct: 672 GASAKLINDPSSTITVSDVYP 692
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = -1
Query: 336 VFP-RGGPRVPFGKTGNFFPL 277
VFP R P P G T N FP+
Sbjct: 15 VFPSRAHPSPPLGLTSNLFPI 35
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 24.2 bits (50), Expect = 5.4
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -1
Query: 330 PRGGPRVPFGK 298
P GGP++PFG+
Sbjct: 450 PHGGPKLPFGR 460
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 52 FNKFSITCR*HVKNWNQWIWP 114
FN SI R V W QWI+P
Sbjct: 244 FNLHSICDRNTVHMWLQWIFP 264
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 175 IYSDHLSSLFNRSTEHQTANAA 110
I +DHL+ +FN + + Q +AA
Sbjct: 36 IVNDHLNRVFNYTVDQQKIHAA 57
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 54 QQIFYNLPITCQKLESMDL 110
Q++ YNL I+ K E+MD+
Sbjct: 368 QKMMYNLAISLAKKENMDI 386
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -1
Query: 333 FPRGGPRVPFGKTGNFFPLTKRIHP 259
FP GG V F + F L +I P
Sbjct: 29 FPNGGKHVVFRRFNEFVALDAQIRP 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,143
Number of Sequences: 5004
Number of extensions: 25387
Number of successful extensions: 69
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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